Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0024628

Physical Location & Seq

Genomic Coordinates Reverse (-)

11259145 .. 11259555

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTGGGAAACAACCATTTGTTTTCAAAGCCTTTGGATGCTTTGGGAGAGGTTCGGGAAGGTGAAGGTTCATGGGTTTGTGGTAAAAACTGGAATTGGGTTTGATGCGTATGTGTGTAACTCGCTCATTGACATGGTTGAGAGTTTCAAGCAGGTGTTTGATGAAATGCCTGAGAGAAACAGGCTTTGTTGGAACGTTACAATCTCGAGGTATCTTAGATGCAGGAGGTTTGAGGAGGCTTTGGATGTGTTTCGGGGGATGCGATGTGAGAGCAACGAGAAGCCTGATGAAGCTACGGTTGTAAGCACCATTTCAGCTTGCACAGCGTTGAAAAATTTGGAGCTTGGTAAAAAAATTCATGAATATTTTAGAAGCGAACTTGGATTTACTATTAGAACTGGAAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

137

Amino Acids

15.91

Weight (kDa)

7.59

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	62 - 107	4.3e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024628)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g00910 pycom15g16110 pycom15g16150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AclI	AACGTT	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	334, 354
AgsI	TTSAA	3 cut(s)	26, 148, 331
AluBI	AGCT	3 cut(s)	293, 317, 343
AluI	AGCT	3 cut(s)	293, 317, 343
Ama87I	CYCGRG	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	334, 354
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	205
BmsI	GCATC	4 cut(s)	27, 94, 209, 249
Bse1I	ACTGG	2 cut(s)	94, 403
BseGI	GGATG	3 cut(s)	42, 250, 264
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	2 cut(s)	94, 403
BseRI	GAGGAG	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	205
BspCNI	CTCAG	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	94, 403
Bst4CI	ACNGT	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	171, 215
BstF5I	GGATG	3 cut(s)	42, 250, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	42, 250, 264
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	319
CciI	TCATGA	1 cut(s)	358
CviAII	CATG	3 cut(s)	71, 133, 359
CviJI	RGCY	7 cut(s)	30, 184, 239, 283, 293, 317, 343
CviKI_1	RGCY	7 cut(s)	30, 184, 239, 283, 293, 317, 343
DdeI	CTNAG	2 cut(s)	171, 215
Eco88I	CYCGRG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	409
FaeI	CATG	3 cut(s)	74, 136, 362
FaiI	YATR	5 cut(s)	72, 111, 134, 360, 409
FatI	CATG	3 cut(s)	70, 132, 358
FokI	GGATG	3 cut(s)	49, 257, 271
Hin1II	CATG	3 cut(s)	74, 136, 362
HphI	GGTGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	55, 205, 359
HpyAV	CCTTC	2 cut(s)	52, 58
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	222, 321, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	171, 215
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	74, 136, 362
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	7 cut(s)	75, 137, 166, 183, 208, 297, 384
LweI	GCATC	4 cut(s)	27, 94, 209, 249
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	116, 196
MluCI	AATT	3 cut(s)	93, 334, 354
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	5 cut(s)	42, 201, 219, 226, 229
Mph1103I	ATGCAT	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	74, 136, 362
NsiI	ATGCAT	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	205
PagI	TCATGA	1 cut(s)	358
PaqCI	CACCTGC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
Psp1406I	AACGTT	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	131
SfaNI	GCATC	4 cut(s)	27, 94, 209, 249
Sfr274I	CTCGAG	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	3 cut(s)	93, 334, 354
SspI	AATATT	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	93, 334, 354
TspDTI	ATGAA	5 cut(s)	59, 177, 303, 347, 375
XapI	RAATTY	2 cut(s)	334, 354
XhoI	CTCGAG	1 cut(s)	205
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.