pycom04g02640

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0022538
Physical Location & Seq
Forward (+)
2361668 .. 2362500
833 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02640.1

Sequence Viewer

Length: 234 bp
ATGGAGGAGAATATGGAAAGCGGACCTCTAAGAAAAGTGAGAATGAGGTGTAGTTTAAAGGTCGAAGATGAAGTGGGGCATTCTGATGACATCGATACAGAGAAAGGTTTGCGAAGAAGAAAGAGAGTAGGTTATTTTCTTGGGGCCATAAAGGATCATACGAAGCAGGAAGAAAGAAAAGTAAATAAGCAGTCCAAGAAAAAATTGGCTTGGTTGGGTAAAAGCTACTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005102 GO:0005488 GO:0005506 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006081 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009058 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016999 GO:0017000 GO:0017144 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032870 GO:0033169 GO:0033993 GO:0035257 GO:0035258 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043401 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0046184 GO:0046292 GO:0046293 GO:0046872 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050681 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0051427 GO:0051716 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0070076 GO:0070887 GO:0070988 GO:0071310 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC zf-4CXXC_R1

Protein Analysis

78

Amino Acids

9.05

Weight (kDa)

9.65

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022538)

Species Orthologous Gene IDs
pyrus_communis pycom04g02640 pycom15g26590 pycom15g31240 pycom16g18660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AclWI GGATC 1 cut(s) 162
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 23, 144
AvaII GGWCC 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 2 cut(s) 23, 144
BmiI GGNNCC 1 cut(s) 145
Bsa29I ATCGAT 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 93
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 146
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 162
BssMI GATC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 29
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 23, 144
ClaI ATCGAT 1 cut(s) 93
CviJI RGCY 3 cut(s) 146, 209, 225
CviKI_1 RGCY 3 cut(s) 146, 209, 225
DdeI CTNAG 1 cut(s) 29
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 23
FaiI YATR 3 cut(s) 14, 149, 159
HaeIII GGCC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 1 cut(s) 152
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 77, 126, 129, 182
MluCI AATT 1 cut(s) 203
MnlI CCTC 2 cut(s) 36, 39
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 79
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 145
PctI GAATGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 23, 144
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 56
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 23, 144
SetI ASST 6 cut(s) 28, 50, 63, 109, 133, 227
SgeI CNNG 4 cut(s) 152, 179, 208, 222
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 84
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 21
TaqI TCGA 2 cut(s) 63, 93
TasI AATT 1 cut(s) 203
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.