Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0029253

Physical Location & Seq

Genomic Coordinates Reverse (-)

2496234 .. 2502719

Gene Structure 6486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAAGCTATTTCCTCAGCACCACACACCACTTCATTATTCGGCAGAGCCACCAACCGCTTCAAAATCCCATTCCCTTCCTTCATCCGAAACACCATGTCTGATTCCAATCACCAATCCCTTCCTCCTTTTTCCTCCCCAAGAATGGTCGTCAAGAGGGTCCTCGCCAAGACCCAGCACGAAGGCGATGGTGCTGTTGTCAAGAGAGCCATTGGAAGCAGCGAGTTGAGGAACCTGGATCCTTTTCTGATGATCGATCACTTTTCAGTGTCCCCACCTGCTGGATTTCCTGACCACGCGCACAGAGGTTTCGAGACTGTCACATACATGTTAGAGGAGCAATCACTCACCAAGACTTTGCAGGGCACAGGGGTACAATCCGAACTGGGGATGTGCAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

8.0

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029253)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g02760
rosa_multiflora	Rmu_co8213264.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccII	CGCG	1 cut(s)	299
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	233, 246
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	233, 246
ApeKI	GCWGC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	104, 340
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	161, 233, 240
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 281, 387
Bse1I	ACTGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	2 cut(s)	84, 396
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	238, 252, 256
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	29
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	161, 233, 240
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	233, 246
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	238, 252, 256
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	84, 396
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	241, 255, 259
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	238, 252, 256
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	84, 396
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	273, 403
BveI	ACCTGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	97, 328
CviJI	RGCY	3 cut(s)	8, 50, 209
CviKI_1	RGCY	3 cut(s)	8, 50, 209
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	3 cut(s)	240, 254, 258
DpnII	GATC	3 cut(s)	238, 252, 256
Eco47I	GGWCC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	100, 331
FaiI	YATR	3 cut(s)	98, 325, 329
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	96, 327
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	100, 331
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	2 cut(s)	104, 340
Hpy188I	TCNGA	4 cut(s)	89, 103, 249, 382
Hpy188III	TCNNGA	4 cut(s)	154, 202, 290, 313
HpyAV	CCTTC	4 cut(s)	87, 91, 131, 176
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	361, 396
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	100, 331
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	238, 252, 256
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	188, 221, 248, 267, 291, 303, 347, 354, 371
Lsp1109I	GCAGC	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	240, 254, 258
MboI	GATC	3 cut(s)	238, 252, 256
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	25, 135, 145, 150, 173, 222, 299, 328
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	299
NdeII	GATC	3 cut(s)	238, 252, 256
NlaIII	CATG	2 cut(s)	100, 331
NlaIV	GGNNCC	3 cut(s)	161, 233, 240
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	161, 233, 240
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	238, 252, 256
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	4 cut(s)	10, 237, 280, 310
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	326
SsiI	CCGC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	255, 312
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	273, 403
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	24, 73
TspRI	CASTG	2 cut(s)	273, 403
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.