Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8213264.1

Orthogroup ID

OG0029253

Physical Location & Seq

Genomic Coordinates Forward (+)

13 .. 642

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8213264.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggtggtcaagaaggtcctggccaagtcccagagtgagggtgatggagctgttgtcagaagagccattggaatctctgagttgaggaacctggatccgtttctcatgctagataactttacagtgtcccctcctgccggatttccagatcatccacatagaggattcgaaactgtcacatatgtgctacagggaggcatcactcaccaagactttgccgggcacaagggtacaattggagctggagatgtgcaggtaattagtgctagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

90

Amino Acids

9.56

Weight (kDa)

6.38

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029253)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g02760
rosa_multiflora	Rmu_co8213264.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AclWI	GGATC	2 cut(s)	89, 102
AcoI	YGGCCR	1 cut(s)	21
AfaI	GTAC	1 cut(s)	232
AfiI	CCNNNNNNNGG	3 cut(s)	37, 137, 161
AjnI	CCWGG	2 cut(s)	18, 90
AleI	CACNNNNGTG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	50, 242, 270
AluI	AGCT	3 cut(s)	50, 242, 270
AlwI	GGATC	2 cut(s)	89, 102
AoxI	GGCC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	53, 197
AsuII	TTCGAA	1 cut(s)	168
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	94
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	20, 92
BcnI	CCSGG	1 cut(s)	220
BfaI	CTAG	3 cut(s)	110, 267, 271
BfmI	CTRYAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	244
Bme1390I	CCNGG	3 cut(s)	20, 92, 220
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	89, 96
BmrFI	CCNGG	3 cut(s)	20, 92, 220
BmsI	GCATC	1 cut(s)	207
BmtI	GCTAGC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 137, 161
BseBI	CCWGG	2 cut(s)	20, 92
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	3 cut(s)	37, 137, 161
BseMII	CTCAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	138, 219
BslFI	GGGAC	2 cut(s)	13, 112
BslI	CCNNNNNNNGG	3 cut(s)	37, 137, 161
BsmFI	GGGAC	2 cut(s)	13, 112
BsnI	GGCC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	94, 148
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	89, 96
BspMI	ACCTGC	1 cut(s)	244
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	2 cut(s)	89, 102
BspQI	GCTCTTC	1 cut(s)	55
BspT104I	TTCGAA	1 cut(s)	168
BssMI	GATC	2 cut(s)	94, 148
Bst2UI	CCWGG	2 cut(s)	20, 92
Bst4CI	ACNGT	2 cut(s)	124, 175
Bst6I	CTCTTC	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	2 cut(s)	97, 151
BstMBI	GATC	2 cut(s)	94, 148
BstNI	CCWGG	2 cut(s)	20, 92
BstSCI	CCNGG	3 cut(s)	18, 90, 218
BstSFI	CTRYAG	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	231
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	23, 50, 65, 242, 270
CviKI_1	RGCY	5 cut(s)	23, 50, 65, 242, 270
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	2 cut(s)	96, 150
DpnII	GATC	2 cut(s)	94, 148
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	2 cut(s)	18, 90
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	107, 159, 181, 183
FaqI	GGGAC	2 cut(s)	13, 112
FatI	CATG	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	181
FokI	GGATG	1 cut(s)	138
FspBI	CTAG	3 cut(s)	110, 267, 271
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	2 cut(s)	138, 219
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	2 cut(s)	72, 165
HpaII	CCGG	2 cut(s)	138, 219
HphI	GGTGA	2 cut(s)	53, 197
Hpy188I	TCNGA	2 cut(s)	59, 79
Hpy188III	TCNNGA	2 cut(s)	10, 146
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	2 cut(s)	124, 175
HpyCH4V	TGCA	1 cut(s)	253
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	94, 148
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	2 cut(s)	47, 239
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	110, 267, 271
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	96, 150
MboI	GATC	2 cut(s)	94, 148
MboII	GAAGA	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	234
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	23
MluCI	AATT	2 cut(s)	234, 258
MluNI	TGGCCA	1 cut(s)	23
MnlI	CCTC	5 cut(s)	31, 78, 141, 155, 188
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	2 cut(s)	138, 219
MspR9I	CCNGG	3 cut(s)	20, 92, 220
MunI	CAATTG	1 cut(s)	234
MvaI	CCWGG	2 cut(s)	20, 92
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	2 cut(s)	94, 148
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	2 cut(s)	89, 96
NmuCI	GTSAC	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	72, 165
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	18, 90
PspGI	CCWGG	2 cut(s)	18, 90
PspN4I	GGNNCC	2 cut(s)	89, 96
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	94
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	55
Sau3AI	GATC	2 cut(s)	94, 148
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	20, 92, 220
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	6 cut(s)	18, 52, 93, 244, 258, 272
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	188
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	234, 258
SspMI	CTAG	3 cut(s)	110, 267, 271
StyD4I	CCNGG	3 cut(s)	18, 90, 218
TaaI	ACNGT	2 cut(s)	124, 175
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	234, 258
TfiI	GAWTC	2 cut(s)	72, 165
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	16
XspI	CTAG	3 cut(s)	110, 267, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.