Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0029253

Physical Location & Seq

Genomic Coordinates Reverse (-)

2496234 .. 2502719

Gene Structure 6486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAAGCTATTTCCTCAGCACCACACACCACTTCATTATTCGGCAGAGCCACCAACCGCTTCAAAATCCCATTCCCTTCCTTCATCCGAAACACCATGTCTGATTCCAATCACCAATCCCTTCCTCCTTTTTCCTCCCCAAGAATGGTCGTCAAGAGGGTCCTCGCCAAGACCCAGCACGAAGGCGATGGTGCTGTTGTCAAGAGAGCCATTGGAAGCAGCGAGTTGAGGAACCTGGATCCTTTTCTGATGATCGATCACTTTTCAGTGTCCCCACCTGCTGGATTTCCTGACCACGCGCACAGAGGTTTCGAGACTGTCACATACATGTTAGAGGAGCAATCACTCACCAAGACTTTGCAGGGCACAGGGGTACAATCCGAACTGGGGATGTGCAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009785 GO:0009892 GO:0009987 GO:0010033 GO:0010466 GO:0010605 GO:0016020 GO:0019222 GO:0023052 GO:0030162 GO:0030234 GO:0030414 GO:0030522 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032870 GO:0033993 GO:0042221 GO:0042742 GO:0043086 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051704 GO:0051707 GO:0051716 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071478 GO:0071482 GO:0071483 GO:0071495 GO:0071944 GO:0080090 GO:0097305 GO:0097306 GO:0098542 GO:0098772 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pirin Pirin_C

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

8.0

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pirin	PF02678	67 - 113	8.5e-08	Pirin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029253)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g02760
rosa_multiflora	Rmu_co8213264.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	281
AccII	CGCG	1 cut(s)	299
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	2 cut(s)	233, 246
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	233, 246
ApeKI	GCWGC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	104, 340
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	308
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	161, 233, 240
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	395
Bpu10I	CCTNAGC	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 281, 387
Bse1I	ACTGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	2 cut(s)	84, 396
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	231
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	145, 281, 387
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	3 cut(s)	238, 252, 256
BspACI	CCGC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	29
BspDI	ATCGAT	1 cut(s)	255
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	3 cut(s)	161, 233, 240
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	233, 246
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	238, 252, 256
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	319
BstDEI	CTNAG	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	84, 396
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	3 cut(s)	241, 255, 259
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	238, 252, 256
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	84, 396
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	273, 403
BveI	ACCTGC	1 cut(s)	286
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	2 cut(s)	97, 328
CviJI	RGCY	3 cut(s)	8, 50, 209
CviKI_1	RGCY	3 cut(s)	8, 50, 209
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	3 cut(s)	240, 254, 258
DpnII	GATC	3 cut(s)	238, 252, 256
Eco47I	GGWCC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	100, 331
FaiI	YATR	3 cut(s)	98, 325, 329
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	96, 327
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	100, 331
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	2 cut(s)	104, 340
Hpy188I	TCNGA	4 cut(s)	89, 103, 249, 382
Hpy188III	TCNNGA	4 cut(s)	154, 202, 290, 313
HpyAV	CCTTC	4 cut(s)	87, 91, 131, 176
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	361, 396
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	100, 331
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	238, 252, 256
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	188, 221, 248, 267, 291, 303, 347, 354, 371
Lsp1109I	GCAGC	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	240, 254, 258
MboI	GATC	3 cut(s)	238, 252, 256
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	368
MnlI	CCTC	8 cut(s)	25, 135, 145, 150, 173, 222, 299, 328
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	1 cut(s)	299
NdeII	GATC	3 cut(s)	238, 252, 256
NlaIII	CATG	2 cut(s)	100, 331
NlaIV	GGNNCC	3 cut(s)	161, 233, 240
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	104
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	160
PscI	ACATGT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	161, 233, 240
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	326
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	238, 252, 256
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	4 cut(s)	10, 237, 280, 310
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	326
SsiI	CCGC	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	255, 312
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	273, 403
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	24, 73
TspRI	CASTG	2 cut(s)	273, 403
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.