Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0024631

Physical Location & Seq

Genomic Coordinates Reverse (-)

11300278 .. 11301484

Gene Structure 1207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAAGTGCTTCTCATTCTACATTGGAGAAAAGGACGAACCAAAGAGTACAAATACAACTTTTACCAATGCTGATATGAAGAGATCTGGATCTGAGTTAGATTCACAGAATATCTCTGATGCGAGCACAGAATCCCTGAGGAGGAACCAATATCCTAGTTTCTCTCAGAGACCCAGCAACCTCAGAGTATTCTCAGTTTCGGAGCTGAAGTCTGCCACGAAGAACTTTAGTCGCTCTGTCATGGTTGGAGAGGGCGGGTTTGGGTGTGTCTATAAAGGGCTGATTAAAAGTGAAGAAGATCCTTCTAAAAAACTTGAAGTTGCCGTGAAACAGCTCGGTAAAAGAGGCTTGCAGGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTTGGGGTGGTCGAGCATCCAAACCTTGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAACGAGGAATCCAGCGACTTCTAATTTATGAATACATGCCTAATGGAAGTGTAGAGAACCATTTAGCCAGTCGTTTAGATCCTCTTTCATGGGCCATGAGATTGAGAATAGCACAAGATGCTGCTCGTGGCTTGGCATACTTACATGAAGAAATGGACTTTCAGATCATTTTCAGGGATTTTAAATCTTCAAATATTCTTCTGGATCGATCAATGGAATGCAAAGCTATCAGACTTCGGAATGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

232

Amino Acids

26.17

Weight (kDa)

8.28

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024631)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09030
rosa_samantha	Rh3AG155100 Rh3BG179200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	4 cut(s)	97, 293, 521, 660
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	317, 639
AhlI	ACTAGT	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	3 cut(s)	205, 334, 674
AluI	AGCT	3 cut(s)	205, 334, 674
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	4 cut(s)	97, 293, 521, 660
AoxI	GGCC	1 cut(s)	540
ApeKI	GCWGC	1 cut(s)	569
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	540
AsuHPI	GGTGA	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	573
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	3 cut(s)	156, 422, 694
BglII	AGATCT	1 cut(s)	83
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	540
BmiI	GGNNCC	1 cut(s)	146
BmsI	GCATC	3 cut(s)	109, 412, 556
Bpu10I	CCTNAGC	1 cut(s)	438
Bsa29I	ATCGAT	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	88
BseCI	ATCGAT	1 cut(s)	655
BseGI	GGATG	2 cut(s)	403, 448
BseJI	GATNNNNATC	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	6 cut(s)	84, 128, 179, 196, 207, 429
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	556
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	542
BshVI	ATCGAT	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	1 cut(s)	542
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	128, 360
Bsp143I	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	1 cut(s)	542
BspCNI	CTCAG	6 cut(s)	85, 129, 178, 195, 206, 430
BspDI	ATCGAT	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	146
BspPI	GGATC	4 cut(s)	97, 293, 521, 660
BspTNI	GGTCTC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	516
BssMI	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
BssSI	CACGAG	1 cut(s)	573
Bst2BI	CACGAG	1 cut(s)	573
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	74
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstC8I	GCNNGC	2 cut(s)	124, 350
BstDEI	CTNAG	6 cut(s)	93, 137, 165, 182, 193, 438
BstF5I	GGATG	2 cut(s)	403, 448
BstKTI	GATC	7 cut(s)	86, 92, 301, 529, 615, 655, 659
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	487
BstSLI	GKGCMC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	556
BstX2I	RGATCY	4 cut(s)	83, 89, 298, 526
BstYI	RGATCY	4 cut(s)	83, 89, 298, 526
Bsu15I	ATCGAT	1 cut(s)	655
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	542
BsuTUI	ATCGAT	1 cut(s)	655
BtsCI	GGATG	2 cut(s)	403, 448
Cac8I	GCNNGC	2 cut(s)	124, 350
Cfr13I	GGNCC	1 cut(s)	540
ClaI	ATCGAT	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	5 cut(s)	241, 484, 537, 544, 593
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	6 cut(s)	93, 137, 165, 182, 193, 438
DpnI	GATC	7 cut(s)	85, 91, 300, 528, 614, 654, 658
DpnII	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	227
Eco81I	CCTNAGG	1 cut(s)	137
FaeI	CATG	5 cut(s)	244, 487, 540, 547, 596
FaiI	YATR	9 cut(s)	77, 242, 273, 477, 485, 538, 545, 586, 594
FatI	CATG	5 cut(s)	240, 483, 536, 543, 592
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	2 cut(s)	390, 455
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	3 cut(s)	156, 422, 694
GluI	GCNGC	1 cut(s)	570
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	244, 487, 540, 547, 596
HinfI	GANTC	3 cut(s)	101, 131, 456
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	8 cut(s)	94, 118, 168, 185, 202, 612, 680, 687
Hpy188III	TCNNGA	2 cut(s)	87, 650
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	352, 669
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	6 cut(s)	93, 137, 165, 182, 193, 438
Hsp92II	CATG	5 cut(s)	244, 487, 540, 547, 596
Kzo9I	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	72, 149, 187, 338, 473, 529, 607, 635
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	3 cut(s)	109, 412, 556
MaeI	CTAG	3 cut(s)	156, 422, 694
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	7 cut(s)	85, 91, 300, 528, 614, 654, 658
MboI	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
MboII	GAAGA	7 cut(s)	91, 232, 305, 308, 608, 627, 638
MflI	RGATCY	4 cut(s)	83, 89, 298, 526
MhlI	GDGCHC	2 cut(s)	128, 360
MluCI	AATT	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	8 cut(s)	132, 135, 191, 244, 338, 433, 446, 540
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	3 cut(s)	285, 381, 630
Mva1269I	GAATGC	1 cut(s)	671
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
NlaIII	CATG	5 cut(s)	244, 487, 540, 547, 596
NlaIV	GGNNCC	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	487
PctI	GAATGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	101, 131, 456
PkrI	GCNGC	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	540
PsuI	RGATCY	4 cut(s)	83, 89, 298, 526
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	285, 381, 630
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	7 cut(s)	83, 89, 298, 526, 612, 652, 656
Sau96I	GGNCC	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	128, 360
SetI	ASST	5 cut(s)	183, 207, 336, 414, 676
SfaNI	GCATC	3 cut(s)	109, 412, 556
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	3 cut(s)	156, 422, 694
TaaI	ACNGT	1 cut(s)	434
TaqI	TCGA	2 cut(s)	399, 655
TasI	AATT	1 cut(s)	471
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	101, 131, 456
Tru1I	TTAA	3 cut(s)	285, 381, 630
Tru9I	TTAA	3 cut(s)	285, 381, 630
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	6 cut(s)	17, 92, 462, 492, 525, 609
XceI	RCATGY	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	156, 422, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.