Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0024631

Physical Location & Seq

Genomic Coordinates Forward (+)

14184637 .. 14189037

Gene Structure 4401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG155100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTGTTGTACACTGTTGGGAGCTATGAAGTGCTTCTCCTTCTATCTTGGAGACAAAAAGGATGAACCAAAAAGCCCAAATATAACATTTACCGATGGTGAAATGAAGAGATCTGGATCTGAGTTGGATTCCCAGAATATCTCTGACGCCAGTTCAGAGTCCTTGAGGAGGAACCAATATCCTAGTTTCTCTCAGAGGCCCAGCAACCTCAGAATATTCACAGTTTCTGAGCTGAAGGCAGCCACTAAGAATTTCGGCCGATCTGGCATGGTTGGAGAGGGTGGGTTTGGGTGTGTCTATAAAGGGCAGATTAAGAGTTTAGAAGATCCATCCCAAAAACTTGAAGTTGCCGTGAAACAGCTCAGTAAAAGAGGGTTGCAGGGGCACAAGGAATGGGTGACAGAAGTTAATGTTCTCGGCGTGGTTGAGCATCCAAACCTTGTCAAACTAGTGGGCTACTGTGCTGAGGATGATGAAAGAGGAATCCAGCGACTTCTTATTTATGAATATATGCCTAATGGAAGTGTAGAGAACCATTTATCAAATCGTTCAGATACACCTCTTTCATGGGCTATGCGATTGAAAATAGCACAAGATGCTGCTCGTGGCTTAGCATACCTACATGAAGAAATGGATTTTCAGATCATTTTCAGGGATTTCAAATCTTCAAATATCCTGTTGGATGAGGAGTGGAACGCAAAGCTATCAGATTTTGGAATGGCTAGGTTGGGTCCAGCAGAAGGATTAAGCCACGTCTCAACAGCGGTATGTTCACGAATGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0009987 GO:0010337 GO:0010565 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0032350 GO:0035821 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044464 GO:0045088 GO:0045089 GO:0046885 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0060089 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0075136 GO:0080134 GO:0080142 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

261

Amino Acids

29.16

Weight (kDa)

6.25

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	89 - 247	2.3e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	90 - 244	1.7e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024631)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g09030
rosa_samantha	Rh3AG155100 Rh3BG179200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	2 cut(s)	124, 320
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	2 cut(s)	168, 740
AgsI	TTSAA	4 cut(s)	344, 583, 661, 669
AhlI	ACTAGT	1 cut(s)	448
AjiI	CACGTC	1 cut(s)	754
AluBI	AGCT	4 cut(s)	23, 232, 361, 703
AluI	AGCT	4 cut(s)	23, 232, 361, 703
Alw26I	GTCTC	2 cut(s)	45, 760
AlwI	GGATC	2 cut(s)	124, 320
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	197, 256
ApeKI	GCWGC	2 cut(s)	239, 599
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	198, 731
AsuHPI	GGTGA	2 cut(s)	110, 409
AvaII	GGWCC	1 cut(s)	731
BaeGI	GKGCMC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	603
BbvCI	CCTCAGC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	251, 586
BccI	CCATC	2 cut(s)	89, 337
BceAI	ACGGC	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	45, 760
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	3 cut(s)	183, 449, 723
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	2 cut(s)	240, 600
BlpI	GCTNAGC	1 cut(s)	610
BlsI	GCNGC	2 cut(s)	241, 601
Bme18I	GGWCC	1 cut(s)	731
BmgBI	CACGTC	1 cut(s)	754
BmgT120I	GGNCC	2 cut(s)	198, 731
BmiI	GGNNCC	2 cut(s)	173, 732
BmsI	GCATC	2 cut(s)	439, 586
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu1102I	GCTNAGC	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 740
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	115
BseGI	GGATG	5 cut(s)	67, 329, 430, 475, 688
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	168, 740
BseMII	CTCAG	6 cut(s)	111, 206, 219, 223, 376, 456
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	181, 701
BseSI	GKGCMC	1 cut(s)	387
BseX3I	CGGCCG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	251, 586
BseYI	CCCAGC	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	199, 258
BsiEI	CGRYCG	1 cut(s)	259
BslI	CCNNNNNNNGG	2 cut(s)	168, 740
BsmAI	GTCTC	2 cut(s)	45, 760
BsmBI	CGTCTC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	2 cut(s)	199, 258
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	110, 116, 260, 325, 642
Bsp1720I	GCTNAGC	1 cut(s)	610
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	2 cut(s)	199, 258
BspCNI	CTCAG	6 cut(s)	112, 205, 220, 222, 375, 457
BspLI	GGNNCC	2 cut(s)	173, 732
BspPI	GGATC	2 cut(s)	124, 320
BsrGI	TGTACA	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	110, 116, 260, 325, 642
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst4CI	ACNGT	3 cut(s)	15, 223, 461
Bst6I	CTCTTC	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	8
BstDEI	CTNAG	8 cut(s)	120, 192, 209, 228, 246, 362, 465, 610
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstF5I	GGATG	5 cut(s)	67, 329, 430, 475, 688
BstKTI	GATC	5 cut(s)	113, 119, 263, 328, 645
BstMAI	GTCTC	2 cut(s)	45, 760
BstMBI	GATC	5 cut(s)	110, 116, 260, 325, 642
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 596
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	251, 586
BstX2I	RGATCY	3 cut(s)	110, 116, 325
BstYI	RGATCY	3 cut(s)	110, 116, 325
BstZI	CGGCCG	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	199, 258
BtrI	CACGTC	1 cut(s)	754
BtsCI	GGATG	5 cut(s)	67, 329, 430, 475, 688
BtsIMutI	CAGTG	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	198, 731
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	3 cut(s)	268, 567, 623
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	8 cut(s)	120, 192, 209, 228, 246, 362, 465, 610
DpnI	GATC	5 cut(s)	112, 118, 262, 327, 644
DpnII	GATC	5 cut(s)	110, 116, 260, 325, 642
EaeI	YGGCCR	1 cut(s)	256
EagI	CGGCCG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EclXI	CGGCCG	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	731
Eco52I	CGGCCG	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	254
EcoNI	CCTNNNNNAGG	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	760
FaeI	CATG	3 cut(s)	271, 570, 626
FatI	CATG	3 cut(s)	267, 566, 622
Fnu4HI	GCNGC	2 cut(s)	240, 600
FokI	GGATG	5 cut(s)	74, 316, 417, 482, 695
Fsp4HI	GCNGC	2 cut(s)	240, 600
FspBI	CTAG	3 cut(s)	183, 449, 723
GluI	GCNGC	2 cut(s)	240, 600
GsaI	CCCAGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	199, 258
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	3 cut(s)	271, 570, 626
HinfI	GANTC	3 cut(s)	128, 158, 483
HphI	GGTGA	2 cut(s)	110, 409
Hpy166II	GTNNAC	2 cut(s)	11, 773
Hpy188I	TCNGA	9 cut(s)	121, 145, 157, 195, 212, 229, 553, 642, 709
Hpy188III	TCNNGA	2 cut(s)	114, 774
Hpy8I	GTNNAC	2 cut(s)	11, 773
HpyAV	CCTTC	3 cut(s)	49, 229, 734
HpyCH4III	ACNGT	3 cut(s)	15, 223, 461
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 596
HpyF3I	CTNAG	8 cut(s)	120, 192, 209, 228, 246, 362, 465, 610
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	3 cut(s)	271, 570, 626
Kzo9I	GATC	5 cut(s)	110, 116, 260, 325, 642
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	2 cut(s)	251, 586
LweI	GCATC	2 cut(s)	439, 586
MaeI	CTAG	3 cut(s)	183, 449, 723
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	5 cut(s)	112, 118, 262, 327, 644
MboI	GATC	5 cut(s)	110, 116, 260, 325, 642
MboII	GAAGA	4 cut(s)	118, 335, 638, 657
MflI	RGATCY	3 cut(s)	110, 116, 325
MhlI	GDGCHC	1 cut(s)	387
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	3 cut(s)	105, 253, 660
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	4 cut(s)	312, 408, 746, 784
MspA1I	CMGCKG	1 cut(s)	764
Mva1269I	GAATGC	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	264, 596
NdeII	GATC	5 cut(s)	110, 116, 260, 325, 642
NlaIII	CATG	3 cut(s)	271, 570, 626
NlaIV	GGNNCC	2 cut(s)	173, 732
NmeAIII	GCCGAG	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	397
PctI	GAATGC	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	128, 483
PkrI	GCNGC	2 cut(s)	241, 601
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	173, 732
PspPI	GGNCC	2 cut(s)	198, 731
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	3 cut(s)	110, 116, 325
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	312, 408, 746, 784
SatI	GCNGC	2 cut(s)	240, 600
Sau3AI	GATC	5 cut(s)	110, 116, 260, 325, 642
Sau96I	GGNCC	2 cut(s)	198, 731
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	387
SfaNI	GCATC	2 cut(s)	439, 586
SinI	GGWCC	1 cut(s)	731
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	448
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	764
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	3 cut(s)	183, 449, 723
TaaI	ACNGT	3 cut(s)	15, 223, 461
TaiI	ACGT	1 cut(s)	756
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	128, 483
Tru1I	TTAA	4 cut(s)	312, 408, 746, 784
Tru9I	TTAA	4 cut(s)	312, 408, 746, 784
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	2 cut(s)	239, 599
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	7 cut(s)	41, 78, 119, 489, 519, 555, 639
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	3 cut(s)	183, 449, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.