pycom04g09990

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0028726
Physical Location & Seq
Reverse (-)
12726762 .. 12729639
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09990.2

Sequence Viewer

Length: 1125 bp
ATGAACTACACTGGAAATGTTAATCTTCGGAAAGGGAAAACAAGTGGGAGCCGCACAAACATTATTATTGGTACGTCAGTTGGGGCTGCTGTCTTGGTCATAGCAACTATTGTATCTGGCGTACTTCTACGGAAAGGAAGGAAGAAATGTTACGAGCATGACCAACTTGGGCATCCACCTGCGCAAGGAATGCATTTTTCTAAGAGTGATGCTCCTAATGAATCTGCACACTGCTTCTCTTATGCCGAAATTGAAGAGGCTACTAGAAAGTTTGAGAGGAAAATAGGTTCCGGAGGTTTTGGAGTTGTTTACTACGGTAAAATGAAGGATGAAAAGGAAATTGCTGTCAAAGTTCTAACCAGCAATTCCTACCAGGGAAAGCGAGAATTTTCAAATGAGGTAACTCTTCTTTCGAGGATACATCACAGAAACCTGGTACAGTTTCTTGGGTATTGCCAAGAGGATGGAAGAAGTATGCTGATTTACGAGTTTATGCATAATGGAACTCTCAAGGAACATCTTTATGGCCCATTAACACGCGAACAGAGTATCAATTGGATCAAACGCCTTGAGATTGCTGAAGATGCTGCAAAAGGAATCGAATACCTTCACACAGGCTGTGTTCCAGCCATCATTCATAGAGATTTAAAAAGCAGTAACATTTTAATTGACAAACACATGAGAGCAAAGGTTTCAGATTTTGGTCTTTCCAAACTTGCAGTAGATGGGGCATCCCATGTGTCAAGCATAGTTCGGGGCACTGTAGGGTATCTGGATCCCGAGTATTACATCTCCCAGCAGTTGACAGACAAGAGTGACGTTTACAGTTTCGGTGTCATTCTGCTTGAGCTGATATCAGGTCAAGAAGCGATATCTAATGAAAACTTTGGTGTTAACTGCCGTAACATAGTGCAATGGGCAAAATTACACATTGAGAGTGGTGACATTCAAGGAATAATCGACCCCTCACTGGATGGCGAATACGACATCCAGTCAATGTGGAAGATAGCAGAAAAAGCCTTAATGTGTGTTCAAGCACACGGATTCATGAGGCCGTCCATGTCAGAAGTTCTCAAAGAAATCCAAGATGCGATCGATCAATGGAAAGGGATGCCGGAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

375

Amino Acids

41.82

Weight (kDa)

6.71

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028726)

Species Orthologous Gene IDs
malus_domestica MD12G1124900.v1.1
pyrus_communis pycom04g09990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc16I TGCGCA 1 cut(s) 183
Acc36I ACCTGC 1 cut(s) 187
AccII CGCG 1 cut(s) 540
AccIII TCCGGA 1 cut(s) 290
AciI CCGC 1 cut(s) 52
AclWI GGATC 3 cut(s) 566, 770, 783
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 3 cut(s) 73, 123, 438
AfiI CCNNNNNNNGG 2 cut(s) 185, 970
AgsI TTSAA 4 cut(s) 254, 393, 950, 1034
AhdI GACNNNNNGTC 1 cut(s) 991
AjnI CCWGG 2 cut(s) 372, 432
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 1 cut(s) 850
AluI AGCT 1 cut(s) 850
AlwI GGATC 3 cut(s) 566, 770, 783
Ama87I CYCGRG 1 cut(s) 779
Aor13HI TCCGGA 1 cut(s) 290
AoxI GGCC 2 cut(s) 526, 1052
ApeKI GCWGC 2 cut(s) 86, 587
ApoI RAATTY 1 cut(s) 386
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 1 cut(s) 953
AvaI CYCGRG 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 761
BaeI ACNNNNGTAYC 4 cut(s) 63, 96, 96, 129
BamHI GGATCC 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbvI GCAGC 2 cut(s) 73, 574
BccI CCATC 4 cut(s) 458, 638, 719, 968
BceAI ACGGC 2 cut(s) 885, 1039
BciT130I CCWGG 2 cut(s) 374, 434
BciVI GTATCC 1 cut(s) 411
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 762
BfuAI ACCTGC 1 cut(s) 187
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 3 cut(s) 52, 87, 588
BlsI GCNGC 3 cut(s) 53, 88, 589
Bme1390I CCNGG 2 cut(s) 374, 434
BmeRI GACNNNNNGTC 1 cut(s) 991
BmeT110I CYCGRG 1 cut(s) 779
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 3 cut(s) 50, 289, 777
BmrFI CCNGG 2 cut(s) 374, 434
BmsI GCATC 6 cut(s) 181, 199, 574, 740, 1078, 1101
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpuEI CTTGAG 3 cut(s) 494, 590, 866
Bsa29I ATCGAT 1 cut(s) 1095
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 970
Bse1I ACTGG 3 cut(s) 16, 975, 991
Bse3DI GCAATG 1 cut(s) 920
BseAI TCCGGA 1 cut(s) 290
BseBI CCWGG 2 cut(s) 374, 434
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 7 cut(s) 172, 334, 469, 731, 979, 987, 1116
BseLI CCNNNNNNNGG 2 cut(s) 185, 970
BseMI GCAATG 1 cut(s) 920
BseNI ACTGG 3 cut(s) 16, 975, 991
BseSI GKGCMC 1 cut(s) 761
BseXI GCAGC 2 cut(s) 73, 574
BseYI CCCAGC 1 cut(s) 795
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 1095
BshFI GGCC 2 cut(s) 528, 1054
BshVI ATCGAT 1 cut(s) 1095
BsiEI CGRYCG 1 cut(s) 1095
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 2 cut(s) 291, 1115
BslI CCNNNNNNNGG 2 cut(s) 185, 970
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 528, 1054
BsoBI CYCGRG 1 cut(s) 779
Bsp1286I GDGCHC 1 cut(s) 761
Bsp13I TCCGGA 1 cut(s) 290
Bsp143I GATC 4 cut(s) 558, 775, 1092, 1096
BspACI CCGC 1 cut(s) 52
BspANI GGCC 2 cut(s) 528, 1054
BspDI ATCGAT 1 cut(s) 1095
BspEI TCCGGA 1 cut(s) 290
BspFNI CGCG 1 cut(s) 540
BspHI TCATGA 1 cut(s) 1047
BspLI GGNNCC 3 cut(s) 50, 289, 777
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 3 cut(s) 566, 770, 783
BsrDI GCAATG 1 cut(s) 920
BsrI ACTGG 3 cut(s) 16, 975, 991
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 4 cut(s) 558, 775, 1092, 1096
Bst2UI CCWGG 2 cut(s) 374, 434
Bst4CI ACNGT 4 cut(s) 317, 441, 763, 827
Bst6I CTCTTC 2 cut(s) 249, 411
BstAPI GCANNNNNTGC 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 7 cut(s) 172, 334, 469, 731, 979, 987, 1116
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 4 cut(s) 561, 778, 1095, 1099
BstMBI GATC 4 cut(s) 558, 775, 1092, 1096
BstMCI CGRYCG 1 cut(s) 1095
BstMWI GCNNNNNNNGC 3 cut(s) 190, 584, 1016
BstNI CCWGG 2 cut(s) 374, 434
BstSCI CCNGG 2 cut(s) 372, 432
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 761
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 73, 574
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 1 cut(s) 775
Bsu15I ATCGAT 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 2 cut(s) 528, 1054
BsuTUI ATCGAT 1 cut(s) 1095
BtsCI GGATG 7 cut(s) 172, 334, 469, 731, 979, 987, 1116
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 4 cut(s) 9, 229, 759, 968
BveI ACCTGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 1047
CfoI GCGC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 527
ClaI ATCGAT 1 cut(s) 1095
CsiI ACCWGGT 1 cut(s) 432
Csp6I GTAC 3 cut(s) 72, 122, 437
CviAII CATG 5 cut(s) 158, 679, 737, 1048, 1060
CviJI RGCY 9 cut(s) 51, 86, 260, 528, 618, 629, 850, 1019, 1054
CviKI_1 RGCY 9 cut(s) 51, 86, 260, 528, 618, 629, 850, 1019, 1054
CviQI GTAC 3 cut(s) 72, 122, 437
DdeI CTNAG 1 cut(s) 201
DpnI GATC 4 cut(s) 560, 777, 1094, 1098
DpnII GATC 4 cut(s) 558, 775, 1092, 1096
DraI TTTAAA 1 cut(s) 648
DriI GACNNNNNGTC 1 cut(s) 991
Eam1104I CTCTTC 2 cut(s) 249, 411
Eam1105I GACNNNNNGTC 1 cut(s) 991
EarI CTCTTC 2 cut(s) 249, 411
Eco32I GATATC 2 cut(s) 855, 873
Eco57I CTGAAG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 779
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoRII CCWGG 2 cut(s) 372, 432
EcoRV GATATC 2 cut(s) 855, 873
EcoT22I ATGCAT 2 cut(s) 195, 498
FaeI CATG 5 cut(s) 161, 682, 740, 1051, 1063
FatI CATG 5 cut(s) 157, 678, 736, 1047, 1059
Fnu4HI GCNGC 3 cut(s) 52, 87, 588
FokI GGATG 6 cut(s) 159, 341, 476, 718, 974, 986
Fsp4HI GCNGC 3 cut(s) 52, 87, 588
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 3 cut(s) 52, 87, 588
GsaI CCCAGC 1 cut(s) 799
HaeIII GGCC 2 cut(s) 528, 1054
HapII CCGG 2 cut(s) 291, 1115
HhaI GCGC 1 cut(s) 184
Hin1II CATG 5 cut(s) 161, 682, 740, 1051, 1063
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 2 cut(s) 804, 895
HindII GTYRAC 2 cut(s) 804, 895
HinfI GANTC 3 cut(s) 221, 597, 1044
HpaI GTTAAC 1 cut(s) 895
HpaII CCGG 2 cut(s) 291, 1115
HphI GGTGA 1 cut(s) 953
Hpy166II GTNNAC 4 cut(s) 310, 804, 823, 895
Hpy188I TCNGA 3 cut(s) 30, 697, 1066
Hpy188III TCNNGA 5 cut(s) 291, 773, 779, 863, 1048
Hpy8I GTNNAC 4 cut(s) 310, 804, 823, 895
HpyAV CCTTC 3 cut(s) 132, 319, 617
HpyCH4III ACNGT 4 cut(s) 317, 441, 763, 827
HpyCH4IV ACGT 2 cut(s) 74, 819
HpyCH4V TGCA 6 cut(s) 193, 227, 496, 590, 719, 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 584, 1016
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 2 cut(s) 74, 819
Hsp92II CATG 5 cut(s) 161, 682, 740, 1051, 1063
HspAI GCGC 1 cut(s) 182
Kpn2I TCCGGA 1 cut(s) 290
KspAI GTTAAC 1 cut(s) 895
Kzo9I GATC 4 cut(s) 558, 775, 1092, 1096
LmnI GCTCC 3 cut(s) 48, 217, 1117
Lsp1109I GCAGC 2 cut(s) 73, 574
LweI GCATC 6 cut(s) 181, 199, 574, 740, 1078, 1101
MabI ACCWGGT 1 cut(s) 432
MaeI CTAG 1 cut(s) 264
MaeII ACGT 2 cut(s) 74, 819
MaeIII GTNAC 6 cut(s) 149, 400, 656, 815, 902, 941
MalI GATC 4 cut(s) 560, 777, 1094, 1098
MboI GATC 4 cut(s) 558, 775, 1092, 1096
MboII GAAGA 7 cut(s) 17, 154, 266, 398, 480, 593, 1015
MfeI CAATTG 1 cut(s) 553
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 1 cut(s) 761
MluCI AATT 7 cut(s) 249, 339, 364, 386, 553, 666, 923
MnlI CCTC 8 cut(s) 250, 270, 287, 391, 408, 454, 976, 1044
Mph1103I ATGCAT 2 cut(s) 195, 498
MroI TCCGGA 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 6 cut(s) 21, 533, 647, 665, 894, 1022
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 2 cut(s) 291, 1115
MspR9I CCNGG 2 cut(s) 374, 434
MunI CAATTG 1 cut(s) 553
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 2 cut(s) 374, 434
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 3 cut(s) 190, 584, 1016
NdeII GATC 4 cut(s) 558, 775, 1092, 1096
NlaIII CATG 5 cut(s) 161, 682, 740, 1051, 1063
NlaIV GGNNCC 3 cut(s) 50, 289, 777
NmuCI GTSAC 2 cut(s) 815, 941
NsbI TGCGCA 1 cut(s) 183
NsiI ATGCAT 2 cut(s) 195, 498
PagI TCATGA 1 cut(s) 1047
PaqCI CACCTGC 1 cut(s) 187
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 3 cut(s) 221, 597, 1044
PkrI GCNGC 3 cut(s) 53, 88, 589
Ple19I CGATCG 1 cut(s) 1095
Psp6I CCWGG 2 cut(s) 372, 432
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 2 cut(s) 372, 432
PspN4I GGNNCC 3 cut(s) 50, 289, 777
PspPI GGNCC 1 cut(s) 527
PsuI RGATCY 1 cut(s) 775
PvuI CGATCG 1 cut(s) 1095
RsaI GTAC 3 cut(s) 73, 123, 438
RsaNI GTAC 3 cut(s) 72, 122, 437
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 6 cut(s) 21, 533, 647, 665, 894, 1022
SatI GCNGC 3 cut(s) 52, 87, 588
Sau3AI GATC 4 cut(s) 558, 775, 1092, 1096
Sau96I GGNCC 1 cut(s) 527
ScrFI CCNGG 2 cut(s) 374, 434
SduI GDGCHC 1 cut(s) 761
SexAI ACCWGGT 1 cut(s) 432
SfaNI GCATC 6 cut(s) 181, 199, 574, 740, 1078, 1101
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 3 cut(s) 509, 569, 845
SmoI CTYRAG 3 cut(s) 509, 569, 845
Sse9I AATT 7 cut(s) 249, 339, 364, 386, 553, 666, 923
SsiI CCGC 1 cut(s) 52
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 2 cut(s) 372, 432
TaaI ACNGT 4 cut(s) 317, 441, 763, 827
TaiI ACGT 2 cut(s) 77, 822
TaqI TCGA 4 cut(s) 413, 600, 960, 1095
TasI AATT 7 cut(s) 249, 339, 364, 386, 553, 666, 923
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 3 cut(s) 221, 597, 1044
Tru1I TTAA 6 cut(s) 21, 533, 647, 665, 894, 1022
Tru9I TTAA 6 cut(s) 21, 533, 647, 665, 894, 1022
TscAI CASTG 4 cut(s) 16, 236, 766, 975
TseFI GTSAC 2 cut(s) 815, 941
TseI GCWGC 2 cut(s) 86, 587
Tsp45I GTSAC 2 cut(s) 815, 941
TspDTI ATGAA 7 cut(s) 17, 234, 338, 345, 626, 894, 1036
TspGWI ACGGA 2 cut(s) 145, 1056
TspRI CASTG 4 cut(s) 16, 236, 766, 975
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 1 cut(s) 264
Zsp2I ATGCAT 2 cut(s) 195, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.