pycom04g10080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0024540
Physical Location & Seq
Forward (+)
12823243 .. 12823461
219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGCTCTATCTAGGCTTCCTCCAAAGAGAGGCCGGATCGATGTTCAGGTAGTGTTCAGTCTTGTCAAATTGGTGGTAAGAGTAGCTTCGAAAGTCGGGAGAGGGTTGAGCTGCCGTAGAAAGGTGGCGACACAGGTTGTGCAGGCACCTATGCAGCCGGATAGTGATCAAATTAATCACGTGCAGGTCATACGAGCGTTGATGTCTTTAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.89

Weight (kDa)

11.79

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024540)

Species Orthologous Gene IDs
prunus_persica Prupe.6G242900_v2.0.a1
pyrus_communis pycom04g10080 pycom04g10090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 145
AclWI GGATC 1 cut(s) 44
AcvI CACGTG 1 cut(s) 181
AfiI CCNNNNNNNGG 2 cut(s) 29, 121
AluBI AGCT 3 cut(s) 86, 111, 212
AluI AGCT 3 cut(s) 86, 111, 212
AlwI GGATC 1 cut(s) 44
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 3 cut(s) 111, 154, 212
AseI ATTAAT 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 181
BbvI GCAGC 3 cut(s) 98, 166, 199
BceAI ACGGC 1 cut(s) 99
BclI TGATCA 1 cut(s) 166
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 3 cut(s) 112, 155, 213
BlsI GCNGC 3 cut(s) 113, 156, 214
BmiI GGNNCC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 121
Bse8I GATNNNNATC 1 cut(s) 165
BseCI ATCGAT 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 29, 121
BseXI GCAGC 3 cut(s) 98, 166, 199
BsgI GTGCAG 2 cut(s) 161, 203
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 2 cut(s) 34, 158
BslI CCNNNNNNNGG 2 cut(s) 29, 121
BsnI GGCC 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 89
Bsp143I GATC 2 cut(s) 36, 166
BspANI GGCC 1 cut(s) 33
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 1 cut(s) 44
BspT104I TTCGAA 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 145
BssMI GATC 2 cut(s) 36, 166
BstBAI YACGTR 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 144
BstKTI GATC 2 cut(s) 39, 169
BstMBI GATC 2 cut(s) 36, 166
BstV1I GCAGC 3 cut(s) 98, 166, 199
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 39
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 39
CviJI RGCY 7 cut(s) 5, 16, 33, 86, 111, 157, 212
CviKI_1 RGCY 7 cut(s) 5, 16, 33, 86, 111, 157, 212
DpnI GATC 2 cut(s) 38, 168
DpnII GATC 2 cut(s) 36, 166
Eco72I CACGTG 1 cut(s) 181
FaiI YATR 3 cut(s) 152, 191, 217
FalI AAGNNNNNCTT 2 cut(s) 70, 102
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 3 cut(s) 112, 155, 213
Fsp4HI GCNGC 3 cut(s) 112, 155, 213
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 112, 155, 213
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 34, 158
HpaII CCGG 2 cut(s) 34, 158
Hpy188III TCNNGA 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 4 cut(s) 142, 154, 184, 215
HpySE526I ACGT 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 2 cut(s) 36, 166
LpnPI CCDG 6 cut(s) 32, 47, 119, 128, 170, 171
Lsp1109I GCAGC 3 cut(s) 98, 166, 199
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 180
MalI GATC 2 cut(s) 38, 168
MboI GATC 2 cut(s) 36, 166
MluCI AATT 2 cut(s) 68, 171
MnlI CCTC 3 cut(s) 23, 30, 95
MseI TTAA 1 cut(s) 174
MspI CCGG 2 cut(s) 34, 158
NdeII GATC 2 cut(s) 36, 166
NlaIV GGNNCC 1 cut(s) 147
NspV TTCGAA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 113, 156, 214
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 174
PspCI CACGTG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 3 cut(s) 112, 155, 213
Sau3AI GATC 2 cut(s) 36, 166
SetI ASST 9 cut(s) 51, 88, 113, 126, 138, 151, 183, 189, 214
SfuI TTCGAA 1 cut(s) 89
Sse9I AATT 2 cut(s) 68, 171
SspMI CTAG 1 cut(s) 12
TaiI ACGT 1 cut(s) 183
TaqI TCGA 2 cut(s) 39, 89
TasI AATT 2 cut(s) 68, 171
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 3 cut(s) 111, 154, 212
VspI ATTAAT 1 cut(s) 174
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.