pycom04g13090

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0029260
Physical Location & Seq
Reverse (-)
16101965 .. 16103063
1099 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13090.2

Sequence Viewer

Length: 576 bp
ATGGCTCAGTGTTCTGCTTGTTATGGAAGGGGTTTAATTGCTCATAAAGATGGATCTGATTCAATATGTGGGAGTTGCAATGGTAAGGGAAAGATCCCCTGTGCAAGTTGTGGATCTCGTGGTTTGATAAGATGTTTGACATGCCAAGGGAGTGGTTCTCTTTTGACACACAAAGTTGCCGTTGTTAAATGGAAGACACTTTCAACCAGAAAGGTGAGCGCGACAAGCGGAGCAGCATCTGTGCCAGATGATGTTTTCCACAGAGCGAAAGGAGTCCAGTTGTGCAACACTCAGGCATACCCGTGCAGTCCAGCCTTCTTTGCCGACTCTTTCTTTCTTAACCAGTTCTCCTCCGAAGTCATTGCAGACAGAGCTCATGTACCTTTCACTGCAAGGGTGATTAGTGAGAGGCATACCATCTCTGTTCTGCCGGTGACACGCGTCACCATGGCTCATCGCAATCAGTTGTTCAGCTTCTATATCATCGGGTTTAGCAGGGAGGTGTACTTAAGGGACTACTATCCATCCAGGTTTTGCTGGGGGTTGTGCCCTTGCTTGGAGTGGTTGAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

20.99

Weight (kDa)

9.2

Isoelectric Point (pI)

31.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029260)

Species Orthologous Gene IDs
pyrus_communis pycom04g13090
rosa_multiflora Rmu_co7996772.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 221, 441
AciI CCGC 1 cut(s) 228
AclWI GGATC 3 cut(s) 61, 88, 121
AfaI GTAC 2 cut(s) 381, 506
AfiI CCNNNNNNNGG 1 cut(s) 556
AflII CTTAAG 1 cut(s) 508
AflIII ACRYGT 1 cut(s) 439
AgsI TTSAA 3 cut(s) 63, 204, 568
AjnI CCWGG 1 cut(s) 527
AluBI AGCT 2 cut(s) 374, 474
AluI AGCT 2 cut(s) 374, 474
Alw21I GWGCWC 1 cut(s) 376
AlwI GGATC 3 cut(s) 61, 88, 121
AlwNI CAGNNNCTG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 221
AsuHPI GGTGA 4 cut(s) 226, 409, 436, 445
BaeGI GKGCMC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 376
BauI CACGAG 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 376
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 44, 425, 532
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 529
BfrI CTTAAG 1 cut(s) 508
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 529
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BsaJI CCNNGG 2 cut(s) 145, 447
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse118I RCCGGY 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 277, 343
Bse3DI GCAATG 2 cut(s) 85, 360
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 2 cut(s) 145, 447
BseGI GGATG 1 cut(s) 524
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 2 cut(s) 85, 360
BseMII CTCAG 2 cut(s) 20, 305
BseNI ACTGG 2 cut(s) 277, 343
BseRI GAGGAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 325
Bsh1236I CGCG 2 cut(s) 221, 441
BsiHKAI GWGCWC 1 cut(s) 376
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 556
BsmFI GGGAC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 376, 551
Bsp143I GATC 3 cut(s) 53, 93, 113
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 19, 304
BspFNI CGCG 2 cut(s) 221, 441
BspPI GGATC 3 cut(s) 61, 88, 121
BspTI CTTAAG 1 cut(s) 508
BsrDI GCAATG 2 cut(s) 85, 360
BsrFI RCCGGY 1 cut(s) 430
BsrI ACTGG 2 cut(s) 277, 343
BssAI RCCGGY 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 145, 447
BssMI GATC 3 cut(s) 53, 93, 113
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 2 cut(s) 145, 447
Bst2BI CACGAG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 529
BstAFI CTTAAG 1 cut(s) 508
BstDEI CTNAG 2 cut(s) 6, 291
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 524
BstFNI CGCG 2 cut(s) 221, 441
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 56, 96, 116
BstMBI GATC 3 cut(s) 53, 93, 113
BstMWI GCNNNNNNNGC 3 cut(s) 225, 320, 371
BstNI CCWGG 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 144
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 551
BstUI CGCG 2 cut(s) 221, 441
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 3 cut(s) 53, 93, 113
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 3 cut(s) 53, 93, 113
BtgI CCRYGG 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 440
BtsCI GGATG 1 cut(s) 524
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 2 cut(s) 14, 387
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 430
CseI GACGC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 380, 505
CviAII CATG 3 cut(s) 141, 377, 448
CviJI RGCY 5 cut(s) 5, 314, 374, 452, 474
CviKI_1 RGCY 5 cut(s) 5, 314, 374, 452, 474
CviQI GTAC 2 cut(s) 380, 505
DdeI CTNAG 2 cut(s) 6, 291
DpnI GATC 3 cut(s) 55, 95, 115
DpnII GATC 3 cut(s) 53, 93, 113
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 2 cut(s) 145, 447
Eco24I GRGCYC 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 2 cut(s) 145, 447
EcoT38I GRGCYC 1 cut(s) 376
ErhI CCWWGG 2 cut(s) 145, 447
FaeI CATG 3 cut(s) 144, 380, 451
FaiI YATR 9 cut(s) 24, 45, 67, 142, 298, 378, 414, 449, 480
FaqI GGGAC 1 cut(s) 527
FatI CATG 3 cut(s) 140, 376, 447
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 234
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 541
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 221
Hin1II CATG 3 cut(s) 144, 380, 451
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 3 cut(s) 59, 273, 326
HpaII CCGG 1 cut(s) 431
HphI GGTGA 4 cut(s) 226, 409, 436, 445
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 2 cut(s) 58, 355
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 21, 325
HpyCH4V TGCA 6 cut(s) 78, 104, 285, 306, 365, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 320, 371
HpyF3I CTNAG 2 cut(s) 6, 291
Hsp92II CATG 3 cut(s) 144, 380, 451
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 53, 93, 113
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 433, 442
MalI GATC 3 cut(s) 55, 95, 115
MboI GATC 3 cut(s) 53, 93, 113
MboII GAAGA 1 cut(s) 205
MflI RGATCY 3 cut(s) 53, 93, 113
MhlI GDGCHC 2 cut(s) 376, 551
MluCI AATT 1 cut(s) 36
MluI ACGCGT 1 cut(s) 439
MlyI GAGTC 2 cut(s) 282, 320
MnlI CCTC 3 cut(s) 361, 402, 493
MseI TTAA 4 cut(s) 35, 186, 339, 509
MslI CAYNNNNRTG 2 cut(s) 48, 301
MspCI CTTAAG 1 cut(s) 508
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 529
MvaI CCWGG 1 cut(s) 529
MvnI CGCG 2 cut(s) 221, 441
MwoI GCNNNNNNNGC 3 cut(s) 225, 320, 371
NcoI CCATGG 1 cut(s) 447
NdeII GATC 3 cut(s) 53, 93, 113
NlaIII CATG 3 cut(s) 144, 380, 451
NmuCI GTSAC 2 cut(s) 433, 442
NspI RCATGY 1 cut(s) 144
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 281, 320
PpsI GAGTC 2 cut(s) 281, 320
PshAI GACNNNNGTC 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 537
PspGI CCWGG 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 239
PsuI RGATCY 3 cut(s) 53, 93, 113
RsaI GTAC 2 cut(s) 381, 506
RsaNI GTAC 2 cut(s) 380, 505
RseI CAYNNNNRTG 2 cut(s) 48, 301
SacI GAGCTC 1 cut(s) 376
SaqAI TTAA 4 cut(s) 35, 186, 339, 509
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 53, 93, 113
SchI GAGTC 2 cut(s) 282, 320
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 2 cut(s) 376, 551
SetI ASST 6 cut(s) 216, 376, 385, 476, 504, 533
SfaNI GCATC 1 cut(s) 245
SmiMI CAYNNNNRTG 2 cut(s) 48, 301
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 228
SstI GAGCTC 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 2 cut(s) 145, 447
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 504
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 4 cut(s) 35, 186, 339, 509
Tru9I TTAA 4 cut(s) 35, 186, 339, 509
TscAI CASTG 2 cut(s) 14, 394
TseFI GTSAC 2 cut(s) 433, 442
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 433, 442
TspRI CASTG 2 cut(s) 14, 394
Vha464I CTTAAG 1 cut(s) 508
XceI RCATGY 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.