Rmu_co7996772.1_g000001

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7996772.1
OG0029260
Physical Location & Seq
Forward (+)
1 .. 476
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7996772.1_g000001.1.cds

Sequence Viewer

Length: 385 bp
gaagacactttcaactagaaaggtaagtgcaacaagcggagcagcatctgttcccgatgatgttttccacagagccaaaggggtccagttgtgcaacacccaggcacatcaatgcactccagccttctttgccgactcttatttcctcaacaagttctcatcggaagtcatcgctgacagagctcctgtgcctgtctctgcaagggtcataagcgaaaggcacaccatatccgtagttccagtgacacgcgtcacaatggctcatcgcaaccgattattcagtttctacatcattgggtttagcagggaggtgtatctaaaggactactatccctctcggttttgctggggcttgtgcccgtgcttggagtggttgaagttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.38

Weight (kDa)

9.43

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029260)

Species Orthologous Gene IDs
pyrus_communis pycom04g13090
rosa_multiflora Rmu_co7996772.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 250
AciI CCGC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 248
AgsI TTSAA 2 cut(s) 13, 377
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 83
AvaII GGWCC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 54
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 16
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 54
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 86, 240
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 365
BseNI ACTGG 2 cut(s) 86, 240
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 1 cut(s) 54
BseYI CCCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 185, 360
BspACI CCGC 1 cut(s) 37
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 84
BsrI ACTGG 2 cut(s) 86, 240
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 129, 180
BstNI CCWGG 1 cut(s) 102
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 54
BstV2I GAAGAC 1 cut(s) 9
BtgZI GCGATG 2 cut(s) 155, 249
BtsIMutI CAGTG 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 1 cut(s) 239
CviJI RGCY 5 cut(s) 75, 123, 183, 261, 352
CviKI_1 RGCY 5 cut(s) 75, 123, 183, 261, 352
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 83
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 185
FaiI YATR 2 cut(s) 210, 228
Fnu4HI GCNGC 1 cut(s) 43
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 16
GluI GCNGC 1 cut(s) 43
GsaI CCCAGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 103
HgaI GACGC 1 cut(s) 239
HinfI GANTC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 164
Hpy188III TCNNGA 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 134
HpyCH4V TGCA 4 cut(s) 30, 94, 115, 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 180
LmnI GCTCC 2 cut(s) 39, 188
LpnPI CCDG 9 cut(s) 87, 99, 114, 133, 199, 205, 253, 290, 332
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 242, 251
MboII GAAGA 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 185, 360
MluI ACGCGT 1 cut(s) 248
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 3 cut(s) 156, 302, 344
MslI CAYNNNNRTG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 129, 180
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 242, 251
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 185
SatI GCNGC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 2 cut(s) 185, 360
SetI ASST 3 cut(s) 25, 185, 313
SfaNI GCATC 1 cut(s) 54
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 110
SsiI CCGC 1 cut(s) 37
SspMI CTAG 1 cut(s) 16
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 100
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 242, 251
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 2 cut(s) 242, 251
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 247
VpaK11BI GGWCC 1 cut(s) 83
XspI CTAG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.