pycom04g15500

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0024634
Physical Location & Seq
Reverse (-)
18378663 .. 18381023
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15500.2

Sequence Viewer

Length: 1377 bp
ATGACTCTGAAAGGGATGATCGATCTGACGCGTTCAACTCAAAGCCATCTGAGTGAATATTCCTCAGAAGCAGCTCTCATCGAATGCAACTTAAAGCTTCTTGGGGCGACTGCTATTGAGGATAAGTTACAAGATGGTGTGCCGGAAGCTATTGAGTCTCTCCGGCAAGCAGGGATCAAGGTTTGGGTTCTTACTGGAGATAAGCAAGAGACAGCTATTTCGATTGGTCTATCATGCAAACTCTTGACAGCAGATATGCAACAAATAATTATAAATGGAACTTCTGAGGATGAATGCCGAAATCTTTTGGCTGATTCTATGGCAAAATATGGTGTAAAATCGTCCAATAAAAGAGACCCAAGTTTCAAACTGAAAAAAAATGCTGAAAATGGCTACCTTGAGATACCTGGCAATGCAAAGACATCCTGTGTGCCTGAATGGAATGGAGGGAAGGAAGAAGGAAAAATGAATGCACCATTAGCACTCATAATAGATGGGAACAGCTTGGTATACATTCTGGAGAAAGATCTAGAGTTAGAGCTATTCGACCTTGCCACATCCTGTAGTGTTGTGTTATGCTGTCGTGTTGCACCTCTGCAGAAAGCTGGAATTGTTGATCTGATTAAGACTCGTACTGATGACATGACATTGGCTATAGGTGATGGGGCAAATGATGTTTCAATGATCCAAATGGCGGATGTTGGAGTTGGAATTTGTGGTCAGGAAGGACGTCAAGCTGTGATGGCTTCAGACTTTGCTATGGGACAGTTTCGGTTTTTGAAAACATTACTTTTGGTGCATGGGCACTGGAATTATCAGCGTGTTGGCTATATGATTCTGTACAACTTCTACCGCAATGCAGTTTTTGTACTGATGCTATTTTGGTTTATATTGTCCACTGCTTTTTCAACAACTTCTGCTTTAACAGATTGGAGTAGTGTTTTCTATTCTGTCATTTATACTTCACTCCCCACAATTGTTGTTGGTATACTGGACAAAGACTTGAGCCACAGGACACTGTTACAATATCCAAAACTCTATGGTGCTGGCCATAGACACGAGGCATACAATTTACATCTCTTCTGGATCACAATGCTTGACACCGTATGGCAGAGTCTTGTTCTCTTCTATGTACCCCTCTTCACCTATAAGGATAGCTCAATAGACATATGGAGCATGGGCAGTTTATGGACGATTGCAGTTGTTGTCCTTGTCAATGTGCATTTGGCAATGGACGTTCATCGTTGGGTATTCATCACTCAAATCGCAGTATGGGGTTCAATAATTATCACATATGCCTGTATGGTGGTATTGGATTCTATACCTGTCTTTCCTAATTACTGGACTATATACCATTTGGCAAAGTCTCCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

459

Amino Acids

51.13

Weight (kDa)

5.6

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024634)

Species Orthologous Gene IDs
pyrus_communis pycom04g15500 pycom12g17720
rosa_samantha Rh2BG228000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AatII GACGTC 1 cut(s) 733
AccI GTMKAC 2 cut(s) 510, 988
AccII CGCG 1 cut(s) 31
AciI CCGC 2 cut(s) 695, 853
AclWI GGATC 3 cut(s) 182, 679, 1094
AcoI YGGCCR 1 cut(s) 1048
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 732
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 4 cut(s) 634, 842, 870, 1134
AfiI CCNNNNNNNGG 1 cut(s) 694
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 6 cut(s) 36, 367, 681, 781, 909, 1281
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 9 cut(s) 74, 97, 149, 215, 504, 541, 605, 737, 1158
AluI AGCT 9 cut(s) 74, 97, 149, 215, 504, 541, 605, 737, 1158
Alw26I GTCTC 4 cut(s) 162, 203, 348, 1371
AlwI GGATC 3 cut(s) 182, 679, 1094
AoxI GGCC 1 cut(s) 1048
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 711
ArsI GACNNNNNNTTYG 2 cut(s) 202, 234
AsuHPI GGTGA 2 cut(s) 671, 1135
BaeGI GKGCMC 1 cut(s) 807
BalI TGGCCA 1 cut(s) 1050
BauI CACGAG 1 cut(s) 1058
BbvI GCAGC 1 cut(s) 83
BccI CCATC 5 cut(s) 54, 128, 488, 656, 736
BciT130I CCWGG 1 cut(s) 408
BcoDI GTCTC 4 cut(s) 162, 203, 348, 1371
BfaI CTAG 1 cut(s) 530
BfmI CTRYAG 3 cut(s) 562, 596, 654
BglII AGATCT 1 cut(s) 526
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 408
BmsI GCATC 1 cut(s) 864
BpmI CTGGAG 2 cut(s) 216, 539
BpuEI CTTGAG 2 cut(s) 419, 1024
Bsa29I ATCGAT 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 730
BsaI GGTCTC 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 694
Bse1I ACTGG 4 cut(s) 199, 812, 996, 1346
Bse3DI GCAATG 3 cut(s) 418, 862, 1236
BseBI CCWGG 1 cut(s) 408
BseCI ATCGAT 1 cut(s) 21
BseGI GGATG 5 cut(s) 21, 295, 422, 557, 703
BseLI CCNNNNNNNGG 1 cut(s) 694
BseMI GCAATG 3 cut(s) 418, 862, 1236
BseMII CTCAG 3 cut(s) 41, 78, 276
BseNI ACTGG 4 cut(s) 199, 812, 996, 1346
BseSI GKGCMC 1 cut(s) 807
BseXI GCAGC 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 1050
BshVI ATCGAT 1 cut(s) 21
BsiSI CCGG 2 cut(s) 143, 163
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 694
BsmAI GTCTC 4 cut(s) 162, 203, 348, 1371
BsmFI GGGAC 1 cut(s) 777
BsmI GAATGC 3 cut(s) 89, 299, 475
BsnI GGCC 1 cut(s) 1050
Bso31I GGTCTC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 807
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
BspACI CCGC 2 cut(s) 695, 853
BspANI GGCC 1 cut(s) 1050
BspCNI CTCAG 3 cut(s) 42, 77, 277
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 1 cut(s) 31
BspMAI CTGCAG 1 cut(s) 600
BspPI GGATC 3 cut(s) 182, 679, 1094
BspTNI GGTCTC 1 cut(s) 348
BsrDI GCAATG 3 cut(s) 418, 862, 1236
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 4 cut(s) 199, 812, 996, 1346
BssMI GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
BssNAI GTATAC 2 cut(s) 511, 989
BssNI GRCGYC 1 cut(s) 730
BssSI CACGAG 1 cut(s) 1058
Bst1107I GTATAC 2 cut(s) 511, 989
Bst2BI CACGAG 1 cut(s) 1058
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 768, 1020, 1105
Bst6I CTCTTC 3 cut(s) 1085, 1130, 1145
BstACI GRCGYC 1 cut(s) 730
BstAUI TGTACA 1 cut(s) 840
BstC8I GCNNGC 2 cut(s) 168, 1048
BstDEI CTNAG 3 cut(s) 50, 64, 285
BstF5I GGATG 5 cut(s) 21, 295, 422, 557, 703
BstFNI CGCG 1 cut(s) 31
BstKTI GATC 7 cut(s) 21, 25, 177, 529, 619, 687, 1089
BstMAI GTCTC 4 cut(s) 162, 203, 348, 1371
BstMBI GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
BstMWI GCNNNNNNNGC 2 cut(s) 479, 743
BstNI CCWGG 1 cut(s) 408
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 3 cut(s) 562, 596, 654
BstSLI GKGCMC 1 cut(s) 807
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BstZ17I GTATAC 2 cut(s) 511, 989
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 1050
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 5 cut(s) 21, 295, 422, 557, 703
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 3 cut(s) 805, 897, 1016
Cac8I GCNNGC 2 cut(s) 168, 1048
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 1 cut(s) 37
Csp6I GTAC 4 cut(s) 633, 841, 869, 1133
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 4 cut(s) 234, 643, 800, 1177
CviQI GTAC 4 cut(s) 633, 841, 869, 1133
DdeI CTNAG 3 cut(s) 50, 64, 285
DpnI GATC 7 cut(s) 20, 24, 176, 528, 618, 686, 1088
DpnII GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
EaeI YGGCCR 1 cut(s) 1048
Eam1104I CTCTTC 3 cut(s) 1085, 1130, 1145
EarI CTCTTC 3 cut(s) 1085, 1130, 1145
EciI GGCGGA 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 348
Eco57I CTGAAG 1 cut(s) 732
EcoRII CCWGG 1 cut(s) 406
FaeI CATG 4 cut(s) 237, 646, 803, 1180
FaqI GGGAC 1 cut(s) 777
FatI CATG 4 cut(s) 233, 642, 799, 1176
FauNDI CATATG 2 cut(s) 1169, 1294
FblI GTMKAC 2 cut(s) 510, 988
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 5 cut(s) 28, 302, 409, 544, 710
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 530
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 216, 539
HaeIII GGCC 1 cut(s) 1050
HapII CCGG 2 cut(s) 143, 163
HgaI GACGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 4 cut(s) 237, 646, 803, 1180
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 4, 155, 314, 628, 835, 1114, 1316
HpaII CCGG 2 cut(s) 143, 163
HphI GGTGA 2 cut(s) 671, 1135
Hpy166II GTNNAC 3 cut(s) 511, 897, 989
Hpy188I TCNGA 7 cut(s) 9, 27, 51, 67, 286, 621, 751
Hpy188III TCNNGA 5 cut(s) 244, 518, 530, 722, 1084
Hpy8I GTNNAC 3 cut(s) 511, 897, 989
HpyAV CCTTC 3 cut(s) 445, 452, 719
HpyCH4III ACNGT 3 cut(s) 768, 1020, 1105
HpyCH4IV ACGT 2 cut(s) 730, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 743
HpyF3I CTNAG 3 cut(s) 50, 64, 285
HpySE526I ACGT 2 cut(s) 730, 1236
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 4 cut(s) 237, 646, 803, 1180
Kzo9I GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
LmnI GCTCC 1 cut(s) 1173
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 864
MaeI CTAG 1 cut(s) 530
MaeII ACGT 2 cut(s) 730, 1236
MaeIII GTNAC 2 cut(s) 126, 1020
MalI GATC 7 cut(s) 20, 24, 176, 528, 618, 686, 1088
MboI GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
MboII GAAGA 4 cut(s) 467, 1072, 1117, 1132
MfeI CAATTG 1 cut(s) 975
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 807
MlsI TGGCCA 1 cut(s) 1050
MluCI AATT 8 cut(s) 267, 609, 711, 811, 975, 1069, 1284, 1336
MluI ACGCGT 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 1050
MlyI GAGTC 3 cut(s) 164, 622, 1123
MmeI TCCRAC 2 cut(s) 682, 688
MnlI CCTC 7 cut(s) 73, 112, 280, 440, 603, 1054, 1148
Mox20I TGGCCA 1 cut(s) 1050
MscI TGGCCA 1 cut(s) 1050
MseI TTAA 3 cut(s) 92, 624, 923
MslI CAYNNNNRTG 1 cut(s) 51
Msp20I TGGCCA 1 cut(s) 1050
MspI CCGG 2 cut(s) 143, 163
MspR9I CCNGG 1 cut(s) 408
MunI CAATTG 1 cut(s) 975
Mva1269I GAATGC 3 cut(s) 89, 299, 475
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 479, 743
NdeI CATATG 2 cut(s) 1169, 1294
NdeII GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
NlaIII CATG 4 cut(s) 237, 646, 803, 1180
PctI GAATGC 3 cut(s) 89, 299, 475
PfeI GAWTC 3 cut(s) 314, 835, 1316
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 3 cut(s) 163, 622, 1122
PpsI GAGTC 3 cut(s) 163, 622, 1122
PsiI TTATAA 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PstI CTGCAG 1 cut(s) 600
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 4 cut(s) 634, 842, 870, 1134
RsaNI GTAC 4 cut(s) 633, 841, 869, 1133
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 3 cut(s) 92, 624, 923
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 7 cut(s) 18, 22, 174, 526, 616, 684, 1086
SchI GAGTC 3 cut(s) 164, 622, 1123
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 1 cut(s) 864
SfcI CTRYAG 3 cut(s) 562, 596, 654
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 398, 1003
SmoI CTYRAG 2 cut(s) 398, 1003
Sse9I AATT 8 cut(s) 267, 609, 711, 811, 975, 1069, 1284, 1336
SsiI CCGC 2 cut(s) 695, 853
SspI AATATT 1 cut(s) 59
SspMI CTAG 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 3 cut(s) 768, 1020, 1105
TaiI ACGT 2 cut(s) 733, 1239
TaqI TCGA 4 cut(s) 21, 81, 221, 546
TasI AATT 8 cut(s) 267, 609, 711, 811, 975, 1069, 1284, 1336
TatI WGTACW 2 cut(s) 840, 868
TfiI GAWTC 3 cut(s) 314, 835, 1316
Tru1I TTAA 3 cut(s) 92, 624, 923
Tru9I TTAA 3 cut(s) 92, 624, 923
TscAI CASTG 3 cut(s) 812, 904, 1023
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 306, 482, 1229, 1243
TspRI CASTG 3 cut(s) 812, 904, 1023
XapI RAATTY 1 cut(s) 711
XbaI TCTAGA 1 cut(s) 529
XmiI GTMKAC 2 cut(s) 510, 988
XspI CTAG 1 cut(s) 530
ZraI GACGTC 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.