pycom04g16630

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19297436 .. 19301591
4156 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
ATGGCGGAGAAGGTCATGAAGGTGAGCGTGAGGAATTCAATGATGGTGAAGCCGGTGGAGGAGATGCCACGGAGAGCAGTGTGGTTGTCCAACTTGGACCTGGTGCGTCGTGTCAATCACACGCCGAGCGTCTACTTCTACAAGCCTGATCGATCCTGTAGGTCAAACTTCTTCGACCCGGCGGTGCTAAAGCACGCGCTATCCAAGGCCCTCGTGCTCTTCTACCCCTTGGCTGGCCGTCTCAAGCAAAACGGGGGCCGTTTGGAGATCGATTGCAATGCGGAGGGCGTGCTGTTTGTTGTGGCGGAGACCACCTCTGTTGACCTTGATTACTTAGGCGACTTTGCACCCACTGACGAGTTCAGCAACCTCATTCCCTCTGTTGATAGTTCTGTTGGCCTTTCCTCTTATCCCCTCCTGGTGTTGCAGGTCACACACTTCAAATGCGGTGGAGTGGCAGTTGGTGTTGGTATACCACATTGTGTAGCTGATGGAGTTTCTGGTTTCCACTTTATAAATACATGGTCGGAAATGGCTCGTGGCAATCTTGATGACCTTACAAATATTCCACCACACATAGACAGGACATTACTTCGTGCCCAAGACCCGCCTCAGCCTAACGTTGAGTACCAACCTTTTGGAACCCTAAAAAAACCCCTCTGCAGCACAAAAGACGGTAATGTTGAGAGCACAACAGTCTCAATGTTCAGATTGACGAGGGACCAACTCAATATCTTGAAAGCCAAGTCTAAGGAAGATGGGAACACGGTCAACTATAGCACATATGAGATATTAGCAGGTCATGTTTGGAGATGTGCATCCAAGGCACGCGAACTTCCCGTTGATGAAAAGACCAACCTACATGTTGTTGTTGAGGGACGTTCCCGACTGCAACCCCCACTCCCACTTGGTTTCTTTGGCAATGTGATTGTCACAGCTACCATTATTTCCACGGTGGGGGATCTCCAATCAAAACCAACATGGTATGCTTCAAGTTGTATTCGCAATGCTATATCGCAGATTAACGGCAATTATTTTAGATCAGCAATTGACTTCCTTGAGCTTCAGCCTGATCTTTCAGCCCTTGTTGTCGGGGCTGATTCTCTTAGGTCCCCTAATCTTGGAATAACTAGTTGGGTTAGGTTGCCATCTTACGACGCTGATTTCGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATTTGAGGGGAAGGCTTTCGTATTAGGAAGTGCAACTAATGATGGGAGTTTATCAGTCGCCATTTGTCTGCAATCCAAGCATATGAAATCATTTTCAAAGTTGTTCTATGACATATAA

Protein Analysis

442

Amino Acids

48.57

Weight (kDa)

7.58

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 439 2.4e-101 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022401)

Species Orthologous Gene IDs
malus_domestica MD04G1188400.v1.1
pyrus_communis pycom04g16630 pycom04g16670 pycom04g16680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
Acc36I ACCTGC 2 cut(s) 418, 788
AccI GTMKAC 3 cut(s) 132, 472, 1177
AccII CGCG 2 cut(s) 197, 831
AciI CCGC 6 cut(s) 5, 182, 281, 305, 447, 608
AclI AACGTT 1 cut(s) 621
AclWI GGATC 2 cut(s) 147, 969
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 2 cut(s) 34, 1203
AcuI CTGAAG 1 cut(s) 1049
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 4 cut(s) 233, 957, 1121, 1214
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 5 cut(s) 39, 442, 739, 993, 1305
AhlI ACTAGT 1 cut(s) 1130
AjnI CCWGG 2 cut(s) 99, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 1117, 1149
AluBI AGCT 3 cut(s) 488, 938, 1063
AluI AGCT 3 cut(s) 488, 938, 1063
Alw21I GWGCWC 2 cut(s) 219, 692
Alw26I GTCTC 3 cut(s) 245, 302, 703
AlwI GGATC 2 cut(s) 147, 969
AoxI GGCC 4 cut(s) 207, 235, 256, 397
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 2 cut(s) 34, 1203
ArsI GACNNNNNNTTYG 2 cut(s) 1148, 1180
Asp700I GAANNNNTTC 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 34, 58
AvaII GGWCC 4 cut(s) 97, 721, 1110, 1193
BaeGI GKGCMC 1 cut(s) 601
BauI CACGAG 2 cut(s) 212, 537
Bbv12I GWGCWC 2 cut(s) 219, 692
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 1 cut(s) 675
BccI CCATC 6 cut(s) 37, 485, 752, 1156, 1164, 1244
BceAI ACGGC 3 cut(s) 222, 243, 1042
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 2 cut(s) 101, 419
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 245, 302, 703
BcuI ACTAGT 1 cut(s) 1130
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 3 cut(s) 157, 661, 775
BfuAI ACCTGC 2 cut(s) 418, 788
BisI GCNGC 1 cut(s) 664
BlsI GCNGC 1 cut(s) 665
Bme1390I CCNGG 3 cut(s) 101, 179, 419
Bme18I GGWCC 4 cut(s) 97, 721, 1110, 1193
BmgT120I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
BmiI GGNNCC 5 cut(s) 257, 643, 722, 1112, 1194
BmrFI CCNGG 3 cut(s) 101, 179, 419
BmsI GCATC 2 cut(s) 54, 827
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bpu10I CCTNAGC 1 cut(s) 612
BpuEI CTTGAG 2 cut(s) 227, 1079
BpuMI CCSGG 1 cut(s) 179
Bsa29I ATCGAT 2 cut(s) 151, 270
BsaBI GATNNNNATC 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 5 cut(s) 68, 204, 228, 822, 951
BsaXI ACNNNNNCTCC 4 cut(s) 444, 474, 885, 915
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 957, 1121, 1214
Bse118I RCCGGY 1 cut(s) 52
Bse3DI GCAATG 3 cut(s) 283, 928, 1012
Bse8I GATNNNNATC 1 cut(s) 817
BseBI CCWGG 2 cut(s) 101, 419
BseCI ATCGAT 2 cut(s) 151, 270
BseDI CCNNGG 5 cut(s) 68, 204, 228, 822, 951
BseGI GGATG 2 cut(s) 818, 1175
BseJI GATNNNNATC 1 cut(s) 817
BseLI CCNNNNNNNGG 4 cut(s) 233, 957, 1121, 1214
BseMI GCAATG 3 cut(s) 283, 928, 1012
BseMII CTCAG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 1 cut(s) 675
Bsh1236I CGCG 2 cut(s) 197, 831
BshFI GGCC 4 cut(s) 209, 237, 258, 399
BshVI ATCGAT 2 cut(s) 151, 270
BsiHKAI GWGCWC 2 cut(s) 219, 692
BsiSI CCGG 2 cut(s) 53, 179
BslFI GGGAC 4 cut(s) 734, 891, 1096, 1206
BslI CCNNNNNNNGG 4 cut(s) 233, 957, 1121, 1214
BsmAI GTCTC 3 cut(s) 245, 302, 703
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 4 cut(s) 734, 891, 1096, 1206
BsnI GGCC 4 cut(s) 209, 237, 258, 399
Bso31I GGTCTC 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 219, 601, 692
Bsp143I GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
BspACI CCGC 6 cut(s) 5, 182, 281, 305, 447, 608
BspANI GGCC 4 cut(s) 209, 237, 258, 399
BspCNI CTCAG 1 cut(s) 625
BspDI ATCGAT 2 cut(s) 151, 270
BspFNI CGCG 2 cut(s) 197, 831
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 5 cut(s) 257, 643, 722, 1112, 1194
BspMAI CTGCAG 1 cut(s) 665
BspMI ACCTGC 2 cut(s) 418, 788
BspPI GGATC 2 cut(s) 147, 969
BspQI GCTCTTC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 3 cut(s) 283, 928, 1012
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 5 cut(s) 68, 204, 228, 822, 951
BssMI GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
BssNAI GTATAC 1 cut(s) 473
BssSI CACGAG 2 cut(s) 212, 537
BssT1I CCWWGG 3 cut(s) 204, 228, 822
Bst1107I GTATAC 1 cut(s) 473
Bst2BI CACGAG 2 cut(s) 212, 537
Bst2UI CCWGG 2 cut(s) 101, 419
Bst4CI ACNGT 4 cut(s) 677, 697, 769, 955
Bst6I CTCTTC 1 cut(s) 224
BstC8I GCNNGC 4 cut(s) 195, 235, 290, 829
BstDEI CTNAG 4 cut(s) 334, 612, 750, 1106
BstDSI CCRYGG 2 cut(s) 68, 951
BstF5I GGATG 2 cut(s) 818, 1175
BstFNI CGCG 2 cut(s) 197, 831
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 6 cut(s) 151, 155, 270, 964, 1043, 1075
BstMAI GTCTC 3 cut(s) 245, 302, 703
BstMBI GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 824, 1285
BstNI CCWGG 2 cut(s) 101, 419
BstNSI RCATGY 1 cut(s) 866
BstSCI CCNGG 3 cut(s) 99, 177, 417
BstSFI CTRYAG 3 cut(s) 157, 661, 775
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 2 cut(s) 197, 831
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 961
BstXI CCANNNNNNTGG 1 cut(s) 638
BstYI RGATCY 1 cut(s) 961
BstZ17I GTATAC 1 cut(s) 473
Bsu15I ATCGAT 2 cut(s) 151, 270
BsuRI GGCC 4 cut(s) 209, 237, 258, 399
BsuTUI ATCGAT 2 cut(s) 151, 270
BtgI CCRYGG 2 cut(s) 68, 951
BtsCI GGATG 2 cut(s) 818, 1175
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 351
BveI ACCTGC 2 cut(s) 418, 788
Cac8I GCNNGC 4 cut(s) 195, 235, 290, 829
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
ClaI ATCGAT 2 cut(s) 151, 270
CseI GACGC 3 cut(s) 95, 118, 1166
CsiI ACCWGGT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 628
CspCI CAANNNNNGTGG 4 cut(s) 301, 336, 430, 465
CviAII CATG 5 cut(s) 16, 522, 803, 863, 981
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 4 cut(s) 334, 612, 750, 1106
DpnI GATC 6 cut(s) 150, 154, 269, 963, 1042, 1074
DpnII GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EciI GGCGGA 2 cut(s) 20, 320
Eco130I CCWWGG 3 cut(s) 204, 228, 822
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 4 cut(s) 97, 721, 1110, 1193
Eco57I CTGAAG 1 cut(s) 1049
EcoO109I RGGNCCY 3 cut(s) 208, 1110, 1193
EcoRI GAATTC 2 cut(s) 34, 1203
EcoRII CCWGG 2 cut(s) 99, 417
EcoT14I CCWWGG 3 cut(s) 204, 228, 822
ErhI CCWWGG 3 cut(s) 204, 228, 822
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 5 cut(s) 19, 525, 806, 866, 984
FaqI GGGAC 4 cut(s) 734, 891, 1096, 1206
FatI CATG 5 cut(s) 15, 521, 802, 862, 980
FauI CCCGC 1 cut(s) 615
FauNDI CATATG 2 cut(s) 784, 1290
FblI GTMKAC 3 cut(s) 132, 472, 1177
Fnu4HI GCNGC 1 cut(s) 664
FokI GGATG 2 cut(s) 805, 1182
Fsp4HI GCNGC 1 cut(s) 664
FspBI CTAG 1 cut(s) 1131
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 664
HaeIII GGCC 4 cut(s) 209, 237, 258, 399
HapII CCGG 2 cut(s) 53, 179
HgaI GACGC 3 cut(s) 95, 118, 1166
HhaI GCGC 1 cut(s) 199
Hin1II CATG 5 cut(s) 19, 525, 806, 866, 984
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 3 cut(s) 322, 772, 1178
HindII GTYRAC 3 cut(s) 322, 772, 1178
HinfI GANTC 1 cut(s) 1100
HpaII CCGG 2 cut(s) 53, 179
HphI GGTGA 2 cut(s) 34, 58
Hpy166II GTNNAC 5 cut(s) 133, 322, 473, 772, 1178
Hpy188I TCNGA 3 cut(s) 529, 710, 1169
Hpy188III TCNNGA 4 cut(s) 16, 548, 736, 885
Hpy8I GTNNAC 5 cut(s) 133, 322, 473, 772, 1178
Hpy99I CGWCG 2 cut(s) 111, 1160
HpyAV CCTTC 3 cut(s) 4, 13, 1213
HpyCH4III ACNGT 4 cut(s) 677, 697, 769, 955
HpyCH4IV ACGT 2 cut(s) 621, 880
HpyCH4V TGCA 8 cut(s) 276, 347, 427, 663, 818, 892, 1241, 1279
HpyF10VI GCNNNNNNNGC 2 cut(s) 824, 1285
HpyF3I CTNAG 4 cut(s) 334, 612, 750, 1106
HpySE526I ACGT 2 cut(s) 621, 880
Hsp92II CATG 5 cut(s) 19, 525, 806, 866, 984
HspAI GCGC 1 cut(s) 197
Kzo9I GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
LguI GCTCTTC 1 cut(s) 224
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 2 cut(s) 54, 827
MabI ACCWGGT 1 cut(s) 99
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 2 cut(s) 621, 880
MaeIII GTNAC 2 cut(s) 430, 931
MalI GATC 6 cut(s) 150, 154, 269, 963, 1042, 1074
MboI GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
MboII GAAGA 3 cut(s) 163, 211, 767
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 3 cut(s) 219, 601, 692
MluCI AATT 4 cut(s) 34, 1030, 1047, 1203
MmeI TCCRAC 2 cut(s) 114, 507
MroXI GAANNNNTTC 1 cut(s) 1223
MseI TTAA 1 cut(s) 1023
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 2 cut(s) 53, 179
MspR9I CCNGG 3 cut(s) 101, 179, 419
MunI CAATTG 1 cut(s) 1047
MvaI CCWGG 2 cut(s) 101, 419
MvnI CGCG 2 cut(s) 197, 831
MwoI GCNNNNNNNGC 2 cut(s) 824, 1285
NciI CCSGG 1 cut(s) 179
NdeI CATATG 2 cut(s) 784, 1290
NdeII GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
NlaIII CATG 5 cut(s) 19, 525, 806, 866, 984
NlaIV GGNNCC 5 cut(s) 257, 643, 722, 1112, 1194
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 2 cut(s) 430, 931
NspI RCATGY 1 cut(s) 866
PagI TCATGA 1 cut(s) 15
PciI ACATGT 1 cut(s) 862
PciSI GCTCTTC 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 1223
PfeI GAWTC 1 cut(s) 1100
PkrI GCNGC 1 cut(s) 665
PpuMI RGGWCCY 2 cut(s) 1110, 1193
PscI ACATGT 1 cut(s) 862
PsiI TTATAA 1 cut(s) 515
Psp1406I AACGTT 1 cut(s) 621
Psp5II RGGWCCY 2 cut(s) 1110, 1193
Psp6I CCWGG 2 cut(s) 99, 417
PspGI CCWGG 2 cut(s) 99, 417
PspN4I GGNNCC 5 cut(s) 257, 643, 722, 1112, 1194
PspPI GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
PspPPI RGGWCCY 2 cut(s) 1110, 1193
PstI CTGCAG 1 cut(s) 665
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 20
SalI GTCGAC 1 cut(s) 1176
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 1 cut(s) 664
Sau3AI GATC 6 cut(s) 148, 152, 267, 961, 1040, 1072
Sau96I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
ScrFI CCNGG 3 cut(s) 101, 179, 419
SduI GDGCHC 3 cut(s) 219, 601, 692
SexAI ACCWGGT 1 cut(s) 99
SfaNI GCATC 2 cut(s) 54, 827
SfcI CTRYAG 3 cut(s) 157, 661, 775
SinI GGWCC 4 cut(s) 97, 721, 1110, 1193
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 242, 1058
SmoI CTYRAG 2 cut(s) 242, 1058
SpeI ACTAGT 1 cut(s) 1130
Sse9I AATT 4 cut(s) 34, 1030, 1047, 1203
SsiI CCGC 6 cut(s) 5, 182, 281, 305, 447, 608
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 1131
StyD4I CCNGG 3 cut(s) 99, 177, 417
StyI CCWWGG 3 cut(s) 204, 228, 822
TaaI ACNGT 4 cut(s) 677, 697, 769, 955
TaiI ACGT 2 cut(s) 624, 883
TaqI TCGA 4 cut(s) 151, 174, 270, 1177
TasI AATT 4 cut(s) 34, 1030, 1047, 1203
TfiI GAWTC 1 cut(s) 1100
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TscAI CASTG 2 cut(s) 84, 358
TseFI GTSAC 2 cut(s) 430, 931
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 2 cut(s) 430, 931
TspDTI ATGAA 3 cut(s) 32, 861, 1307
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 84, 358
VpaK11BI GGWCC 4 cut(s) 97, 721, 1110, 1193
XapI RAATTY 2 cut(s) 34, 1203
XceI RCATGY 1 cut(s) 866
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
XmiI GTMKAC 3 cut(s) 132, 472, 1177
XmnI GAANNNNTTC 1 cut(s) 1223
XspI CTAG 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.