pycom04g16670

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19318071 .. 19322024
3954 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1326 bp
ATGACGGAGAAGGTCATGAAGGTGAGCGTGAGGGATTCAACGATGGTGAAGCCGGTGGAGGAGATGCCTCCGAGAGCATTGTGGTTGTCCAACTTGGACCGGCTGTGTCGTGTCAATCACACGCCGAGCGTCCACTTCTACAAGCCTGATCAAAACTGTATGTCAAACTTCTTCGACCCGGCGGTGCTAAAGCACGCGCTATCCAAGGCCCTCGTGCTCTTCTACCCCTTGGCTGGCCGTCTCAAGCAAAACGGGGGCCGTTTGGAGATCGATTGCAATGCAGAGGGCGTGCTGTTTGTTGTGGCGGAGACCACCTCTGTTGACCTTGACTACTTAGGCGACTTTGCACCCACTGACGAGTTCAGCAACCTCATTCCCTCTGTTGATAGTTCCGTTGGCCTTTCCTCTTATCCCCTCCTGGTGTTGCAGGTCACACACTTCGAATGCGGTGGAGTGGGAGTTGGTGTTGGTATGTCACATTGCGTAGCTGATGGAGTTTCTGGTTTCCACTTTATGAATACATGGTCGGAAATGGCTCGTGGTAATCTTGATGACCTTACAAATATTCCACCATACATAGACAGGACATTACTTCGTGCCCAAGACCTGCCTCAGCCTAACGTTGAGTACCAACCTTTTGCAACCCCAAAAAAACCTCTCTGCGGCACAAAAGAAGGTGGTGTTGAGAGCACAACAGTCTCAATGTTCAGATTGACGAGGGACCAACTCAATATCTTGAAAGCCAAGTCTAAGGAAGATGGGAACACGATCGACTATAGCACATATGAGATATTAGCAGGTCAAGTTTGGAAATCTGCATCCAAGGCACGTGAACTTCCCGTTGATCAAAAGACCAACCTACGTGTTGTTGTTGAGGGACGTTCCCGACTGCAACCCCCACTCCCACTTGGTTTCTTTGGCAATGTGATTGTCCCAGCTACCATTATTTCCACGGTGGGGGATCTCCAATCAAAACCAACATGGTATGCTTCAAGTTGTATTCACAATGCTATATCGCAGATTAACGACAATTATTTTAGATCAGCAATTGACTTCCTTGAGCTTCAGCCTGATATTTCAGCCCTTGCTGTCACGGCTGATTCTCTTAGGTCCCCTAATCTTGGAATAACTAGTTGGGTTAGGTTGCCATCTTACGACGTTGATTTCGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATTTGAGGGAAAGGCTTTCGTATTAGGAAGTGCAACTAACGATGGGAGTTTATCAGTCGTCATTCGTCTGCAATCCAAGCATATGAAATCATTTTCAAAGTTGTTCTATGACATATAA

Protein Analysis

442

Amino Acids

48.6

Weight (kDa)

5.94

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 439 3e-99 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022401)

Species Orthologous Gene IDs
malus_domestica MD04G1188400.v1.1
pyrus_communis pycom04g16630 pycom04g16670 pycom04g16680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 418, 615, 788
AccI GTMKAC 1 cut(s) 1177
AccII CGCG 1 cut(s) 197
AciI CCGC 4 cut(s) 182, 305, 447, 663
AclI AACGTT 1 cut(s) 621
AclWI GGATC 1 cut(s) 969
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 1203
AcuI CTGAAG 1 cut(s) 1049
AcvI CACGTG 1 cut(s) 830
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 5 cut(s) 233, 662, 957, 1121, 1214
AflIII ACRYGT 1 cut(s) 862
AgsI TTSAA 4 cut(s) 39, 739, 993, 1305
AhlI ACTAGT 1 cut(s) 1130
AjnI CCWGG 1 cut(s) 417
AjuI GAANNNNNNNTTGG 2 cut(s) 1117, 1149
AluBI AGCT 3 cut(s) 488, 938, 1063
AluI AGCT 3 cut(s) 488, 938, 1063
Alw21I GWGCWC 2 cut(s) 219, 692
Alw26I GTCTC 3 cut(s) 245, 302, 703
AlwI GGATC 1 cut(s) 969
AoxI GGCC 4 cut(s) 207, 235, 256, 397
ApoI RAATTY 1 cut(s) 1203
ArsI GACNNNNNNTTYG 2 cut(s) 1148, 1180
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 34, 58
AsuII TTCGAA 1 cut(s) 441
AvaII GGWCC 4 cut(s) 97, 721, 1110, 1193
BaeGI GKGCMC 1 cut(s) 601
BauI CACGAG 2 cut(s) 212, 537
BbrPI CACGTG 1 cut(s) 830
Bbv12I GWGCWC 2 cut(s) 219, 692
BbvCI CCTCAGC 1 cut(s) 612
BccI CCATC 6 cut(s) 37, 485, 752, 1156, 1164, 1244
BceAI ACGGC 3 cut(s) 222, 243, 1110
BcgI CGANNNNNNTGC 2 cut(s) 260, 294
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 2 cut(s) 148, 844
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 245, 302, 703
BcuI ACTAGT 1 cut(s) 1130
BfaI CTAG 1 cut(s) 1131
BfmI CTRYAG 1 cut(s) 775
BfuAI ACCTGC 3 cut(s) 418, 615, 788
BisI GCNGC 1 cut(s) 664
BlsI GCNGC 1 cut(s) 665
Bme1390I CCNGG 2 cut(s) 179, 419
Bme18I GGWCC 4 cut(s) 97, 721, 1110, 1193
BmgT120I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
BmiI GGNNCC 4 cut(s) 257, 722, 1112, 1194
BmrFI CCNGG 2 cut(s) 179, 419
BmsI GCATC 2 cut(s) 54, 827
BplI GAGNNNNNCTC 2 cut(s) 299, 331
Bpu10I CCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 441
BpuEI CTTGAG 2 cut(s) 227, 1079
BpuMI CCSGG 1 cut(s) 179
Bsa29I ATCGAT 1 cut(s) 270
BsaAI YACGTR 2 cut(s) 830, 863
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 4 cut(s) 204, 228, 822, 951
BsaXI ACNNNNNCTCC 6 cut(s) 444, 450, 474, 480, 885, 915
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 662, 957, 1121, 1214
Bse118I RCCGGY 2 cut(s) 52, 99
Bse3DI GCAATG 3 cut(s) 283, 478, 928
BseBI CCWGG 1 cut(s) 419
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 4 cut(s) 204, 228, 822, 951
BseGI GGATG 2 cut(s) 818, 1175
BseLI CCNNNNNNNGG 5 cut(s) 233, 662, 957, 1121, 1214
BseMI GCAATG 3 cut(s) 283, 478, 928
BseMII CTCAG 1 cut(s) 626
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 601
BseYI CCCAGC 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 771
BshFI GGCC 4 cut(s) 209, 237, 258, 399
BshVI ATCGAT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 771
BsiHKAI GWGCWC 2 cut(s) 219, 692
BsiSI CCGG 3 cut(s) 53, 100, 179
BslFI GGGAC 5 cut(s) 734, 891, 917, 1096, 1206
BslI CCNNNNNNNGG 5 cut(s) 233, 662, 957, 1121, 1214
BsmAI GTCTC 3 cut(s) 245, 302, 703
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 5 cut(s) 734, 891, 917, 1096, 1206
BsmI GAATGC 1 cut(s) 449
BsnI GGCC 4 cut(s) 209, 237, 258, 399
Bso31I GGTCTC 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 441
Bsp1286I GDGCHC 3 cut(s) 219, 601, 692
Bsp143I GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
BspACI CCGC 4 cut(s) 182, 305, 447, 663
BspANI GGCC 4 cut(s) 209, 237, 258, 399
BspCNI CTCAG 1 cut(s) 625
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 15
BspLI GGNNCC 4 cut(s) 257, 722, 1112, 1194
BspMI ACCTGC 3 cut(s) 418, 615, 788
BspPI GGATC 1 cut(s) 969
BspQI GCTCTTC 1 cut(s) 224
BspT104I TTCGAA 1 cut(s) 441
BspTNI GGTCTC 1 cut(s) 302
BsrDI GCAATG 3 cut(s) 283, 478, 928
BsrFI RCCGGY 2 cut(s) 52, 99
BssAI RCCGGY 2 cut(s) 52, 99
BssECI CCNNGG 4 cut(s) 204, 228, 822, 951
BssMI GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
BssSI CACGAG 2 cut(s) 212, 537
BssT1I CCWWGG 3 cut(s) 204, 228, 822
Bst2BI CACGAG 2 cut(s) 212, 537
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 158, 697, 955
Bst6I CTCTTC 1 cut(s) 224
BstBAI YACGTR 2 cut(s) 830, 863
BstBI TTCGAA 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 195, 235, 290
BstDEI CTNAG 4 cut(s) 334, 612, 750, 1106
BstDSI CCRYGG 1 cut(s) 951
BstF5I GGATG 2 cut(s) 818, 1175
BstFNI CGCG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 6 cut(s) 151, 270, 771, 847, 964, 1043
BstMAI GTCTC 3 cut(s) 245, 302, 703
BstMBI GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
BstMCI CGRYCG 1 cut(s) 771
BstMWI GCNNNNNNNGC 3 cut(s) 824, 1094, 1285
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 2 cut(s) 177, 417
BstSFI CTRYAG 1 cut(s) 775
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 4 cut(s) 209, 237, 258, 399
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 1 cut(s) 951
BtsCI GGATG 2 cut(s) 818, 1175
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 3 cut(s) 418, 615, 788
Cac8I GCNNGC 3 cut(s) 195, 235, 290
CciI TCATGA 1 cut(s) 15
CfoI GCGC 1 cut(s) 199
Cfr10I RCCGGY 2 cut(s) 52, 99
Cfr13I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 628
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 16, 522, 981
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 4 cut(s) 334, 612, 750, 1106
DpnI GATC 6 cut(s) 150, 269, 770, 846, 963, 1042
DpnII GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
EciI GGCGGA 1 cut(s) 320
Eco130I CCWWGG 3 cut(s) 204, 228, 822
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 4 cut(s) 97, 721, 1110, 1193
Eco57I CTGAAG 1 cut(s) 1049
Eco72I CACGTG 1 cut(s) 830
EcoO109I RGGNCCY 3 cut(s) 208, 1110, 1193
EcoRI GAATTC 1 cut(s) 1203
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 3 cut(s) 204, 228, 822
ErhI CCWWGG 3 cut(s) 204, 228, 822
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 3 cut(s) 19, 525, 984
FaqI GGGAC 5 cut(s) 734, 891, 917, 1096, 1206
FatI CATG 3 cut(s) 15, 521, 980
FauNDI CATATG 2 cut(s) 784, 1290
FbaI TGATCA 2 cut(s) 148, 844
FblI GTMKAC 1 cut(s) 1177
Fnu4HI GCNGC 1 cut(s) 664
FokI GGATG 2 cut(s) 805, 1182
Fsp4HI GCNGC 1 cut(s) 664
FspBI CTAG 1 cut(s) 1131
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 664
GsaI CCCAGC 1 cut(s) 938
HaeIII GGCC 4 cut(s) 209, 237, 258, 399
HapII CCGG 3 cut(s) 53, 100, 179
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 199
Hin1II CATG 3 cut(s) 19, 525, 984
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HincII GTYRAC 2 cut(s) 322, 1178
HindII GTYRAC 2 cut(s) 322, 1178
HinfI GANTC 2 cut(s) 35, 1100
HpaII CCGG 3 cut(s) 53, 100, 179
HphI GGTGA 2 cut(s) 34, 58
Hpy166II GTNNAC 4 cut(s) 133, 322, 833, 1178
Hpy188I TCNGA 4 cut(s) 72, 529, 710, 1169
Hpy188III TCNNGA 4 cut(s) 16, 548, 736, 885
Hpy8I GTNNAC 4 cut(s) 133, 322, 833, 1178
Hpy99I CGWCG 1 cut(s) 1160
HpyAV CCTTC 3 cut(s) 4, 13, 668
HpyCH4III ACNGT 3 cut(s) 158, 697, 955
HpyCH4IV ACGT 5 cut(s) 621, 829, 862, 880, 1158
HpyCH4V TGCA 9 cut(s) 276, 281, 347, 427, 641, 818, 892, 1241, 1279
HpyF10VI GCNNNNNNNGC 3 cut(s) 824, 1094, 1285
HpyF3I CTNAG 4 cut(s) 334, 612, 750, 1106
HpySE526I ACGT 5 cut(s) 621, 829, 862, 880, 1158
Hsp92II CATG 3 cut(s) 19, 525, 984
HspAI GCGC 1 cut(s) 197
Ksp22I TGATCA 2 cut(s) 148, 844
Kzo9I GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
LguI GCTCTTC 1 cut(s) 224
LweI GCATC 2 cut(s) 54, 827
MaeI CTAG 1 cut(s) 1131
MaeII ACGT 5 cut(s) 621, 829, 862, 880, 1158
MaeIII GTNAC 3 cut(s) 430, 474, 1090
MalI GATC 6 cut(s) 150, 269, 770, 846, 963, 1042
MboI GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
MboII GAAGA 3 cut(s) 163, 211, 767
MfeI CAATTG 1 cut(s) 1047
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 3 cut(s) 219, 601, 692
MluCI AATT 3 cut(s) 1030, 1047, 1203
MmeI TCCRAC 2 cut(s) 114, 507
MseI TTAA 1 cut(s) 1023
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 3 cut(s) 53, 100, 179
MspR9I CCNGG 2 cut(s) 179, 419
MunI CAATTG 1 cut(s) 1047
Mva1269I GAATGC 1 cut(s) 449
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 3 cut(s) 824, 1094, 1285
NciI CCSGG 1 cut(s) 179
NdeI CATATG 2 cut(s) 784, 1290
NdeII GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
NlaIII CATG 3 cut(s) 19, 525, 984
NlaIV GGNNCC 4 cut(s) 257, 722, 1112, 1194
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 3 cut(s) 430, 474, 1090
NspV TTCGAA 1 cut(s) 441
PagI TCATGA 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 224
PctI GAATGC 1 cut(s) 449
PfeI GAWTC 2 cut(s) 35, 1100
PkrI GCNGC 1 cut(s) 665
Ple19I CGATCG 1 cut(s) 771
PmaCI CACGTG 1 cut(s) 830
PmlI CACGTG 1 cut(s) 830
Ppu21I YACGTR 2 cut(s) 830, 863
PpuMI RGGWCCY 2 cut(s) 1110, 1193
Psp1406I AACGTT 1 cut(s) 621
Psp5II RGGWCCY 2 cut(s) 1110, 1193
Psp6I CCWGG 1 cut(s) 417
PspCI CACGTG 1 cut(s) 830
PspFI CCCAGC 1 cut(s) 934
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 4 cut(s) 257, 722, 1112, 1194
PspPI GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
PspPPI RGGWCCY 2 cut(s) 1110, 1193
PsuI RGATCY 1 cut(s) 961
PvuI CGATCG 1 cut(s) 771
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 20
SalI GTCGAC 1 cut(s) 1176
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 1023
SatI GCNGC 1 cut(s) 664
Sau3AI GATC 6 cut(s) 148, 267, 768, 844, 961, 1040
Sau96I GGNCC 6 cut(s) 97, 208, 256, 721, 1110, 1193
ScrFI CCNGG 2 cut(s) 179, 419
SduI GDGCHC 3 cut(s) 219, 601, 692
SfaNI GCATC 2 cut(s) 54, 827
SfcI CTRYAG 1 cut(s) 775
SfuI TTCGAA 1 cut(s) 441
SinI GGWCC 4 cut(s) 97, 721, 1110, 1193
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 242, 1058
SmoI CTYRAG 2 cut(s) 242, 1058
SpeI ACTAGT 1 cut(s) 1130
Sse9I AATT 3 cut(s) 1030, 1047, 1203
SsiI CCGC 4 cut(s) 182, 305, 447, 663
SspI AATATT 1 cut(s) 565
SspMI CTAG 1 cut(s) 1131
StyD4I CCNGG 2 cut(s) 177, 417
StyI CCWWGG 3 cut(s) 204, 228, 822
TaaI ACNGT 3 cut(s) 158, 697, 955
TaiI ACGT 5 cut(s) 624, 832, 865, 883, 1161
TaqI TCGA 5 cut(s) 174, 270, 441, 771, 1177
TasI AATT 3 cut(s) 1030, 1047, 1203
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 2 cut(s) 35, 1100
Tru1I TTAA 1 cut(s) 1023
Tru9I TTAA 1 cut(s) 1023
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 3 cut(s) 430, 474, 1090
Tsp45I GTSAC 3 cut(s) 430, 474, 1090
TspDTI ATGAA 3 cut(s) 32, 530, 1307
TspGWI ACGGA 2 cut(s) 20, 382
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 4 cut(s) 97, 721, 1110, 1193
XapI RAATTY 1 cut(s) 1203
XmiI GTMKAC 1 cut(s) 1177
XspI CTAG 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.