pycom04g16680

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
19328534 .. 19330627
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1473 bp
ATGCGTGTATGTATATGTATATATAAAAGCTGCTTCCATTTGCAGCAAAACAATCAATCAAATATATTTGATCCCAAATTTAATAACAAGAACATTCGACCAAAAAAAAAGGTCCTGCGTTCTTACAAAGAAAGGATGGCGGAGAAGGTCATGAAGGTGAGCGTGAGGGATTCAACGATGGTGAAGCCGGTGGAGGAGATGCCTCCGAGAGCATTGTGGTTGTCCAACTTGGACCTGGTGCGTCGTGTCAATCACATGCCGAGCGTCTACTTCTACAAGCCTGATCAAAACTGTAGGTCAAACTTCTTCGACCCGGCGGTGCTAAAGCACGCGCTATCCAAGGCCCTCGTGCTCTTCTACCCCTTGGCTGGCCGTCTCAAGCAAAACGGGGGCCGTTTGGAGATCGATTGCAATGCGGAGGGCGTGCTGTTTGTTGTGGCGGAGACCACCTCTGTTGACCTTGATTACTTAGGCGACTTTGCACCCACTGACGAGTTCAGCAACCTCATTCCCTCTGTTGATAGTTCCGTTGGCCTTTCCTCTTATCCCCTCCTGGTGTTGCAGGTCACATACTTCAAATGCGGTGGAGTGGCAGTTGGTGTTGGTATGTCACATTGCGTAGCTGATGGAGTTTCTGGTTTCCACTTTATAAATACATGGTCGGAAATGGCTCGTGGTAATCTTGATGACCTTACAAATATTCCGCCATACATAGACAGGACATTACTTCGTGCCCAAGACCCGCCTCAGCCTAACGTTGAGTACCAAACTTTTGCAACCCCAAAAAAACCTCTCTGCAGCACAAAAGACGGTGGTGTTGAGAGCACAACAGTCTCAATGTTCAGATTGACGAGGGACCAACTCAGTATCTTGAAAGCCAAGTCTAAGGAAGATGGGAACACGGTCAACTATAGCACATTTGAGATATTAGCAGGTCATGTTTGGAAATGTGCATCCAAGGCACGTGAACTTCCCGTTGATCAAAAGACCAACCTATATGGTGTTGTTGAGGGACGTTCCCGACTGCAACCCCCTCTCCCACTTGGTTTCTTTGGCAATGTGATTGTCAATGCTACCATTAGTTCCATGGTGGGGGATCTCCAATCAAAACCAACATGGTATGCTTCAAGTTGTATTCGCAATGCTATATCGCAGATTAACGGCAATTATTTTAGATCAGCAATTGACTTCCTTGAGCTTCAGCCTGATCTTTCAGCCCTTGTTGTCGGGGCTGATTCTCGTAGGTCCCCTAATATTGGAATAAATAGTTGGGTTAGGTTGCCATCTTACGACGCTGATTTCGGATGGGGTCGACCTATTTTTGTGGGACCTTGTGGAATTCCATTTGAGGGGACGGCTTTCGTATTAGGAAGTGCAACTAATGATGGGAGTTTATCAGTCGCCATTTGTCTGCAATCCAAGCATATGAAATCATTTTCAAAGTTGTTCTATGACATACAAACAAGCAAATGA

Protein Analysis

491

Amino Acids

54.44

Weight (kDa)

8.85

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 51 - 484 1.7e-100 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022401)

Species Orthologous Gene IDs
malus_domestica MD04G1188400.v1.1
pyrus_communis pycom04g16630 pycom04g16670 pycom04g16680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 650
Acc36I ACCTGC 2 cut(s) 553, 923
AccI GTMKAC 2 cut(s) 267, 1312
AccII CGCG 1 cut(s) 332
AciI CCGC 7 cut(s) 140, 317, 416, 440, 582, 704, 743
AclI AACGTT 1 cut(s) 756
AclWI GGATC 2 cut(s) 65, 1104
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 77, 1338
AcuI CTGAAG 1 cut(s) 1184
AcvI CACGTG 1 cut(s) 965
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 4 cut(s) 368, 1092, 1256, 1349
AgsI TTSAA 5 cut(s) 174, 577, 874, 1128, 1440
AjnI CCWGG 2 cut(s) 234, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 1252, 1284
AluBI AGCT 3 cut(s) 30, 623, 1198
AluI AGCT 3 cut(s) 30, 623, 1198
Alw21I GWGCWC 2 cut(s) 354, 827
Alw26I GTCTC 3 cut(s) 380, 437, 838
AlwI GGATC 2 cut(s) 65, 1104
AoxI GGCC 4 cut(s) 342, 370, 391, 532
ApeKI GCWGC 3 cut(s) 30, 43, 798
ApoI RAATTY 2 cut(s) 77, 1338
ArsI GACNNNNNNTTYG 2 cut(s) 1283, 1315
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 7 cut(s) 112, 232, 343, 391, 856, 1245, 1328
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 169, 193
AvaII GGWCC 5 cut(s) 112, 232, 856, 1245, 1328
BaeGI GKGCMC 1 cut(s) 736
BauI CACGAG 2 cut(s) 347, 672
BbrPI CACGTG 1 cut(s) 965
Bbv12I GWGCWC 2 cut(s) 354, 827
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 17, 55, 810
BccI CCATC 7 cut(s) 130, 172, 620, 887, 1291, 1299, 1379
BceAI ACGGC 4 cut(s) 357, 378, 1177, 1371
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 2 cut(s) 236, 554
BclI TGATCA 2 cut(s) 283, 979
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 3 cut(s) 380, 437, 838
BfmI CTRYAG 3 cut(s) 292, 796, 910
BfuAI ACCTGC 2 cut(s) 553, 923
BisI GCNGC 3 cut(s) 31, 44, 799
BlsI GCNGC 3 cut(s) 32, 45, 800
Bme1390I CCNGG 3 cut(s) 236, 314, 554
Bme18I GGWCC 5 cut(s) 112, 232, 856, 1245, 1328
BmgT120I GGNCC 7 cut(s) 112, 232, 343, 391, 856, 1245, 1328
BmiI GGNNCC 4 cut(s) 392, 857, 1247, 1329
BmrFI CCNGG 3 cut(s) 236, 314, 554
BmsI GCATC 2 cut(s) 189, 962
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 2 cut(s) 362, 1214
BpuMI CCSGG 1 cut(s) 314
Bsa29I ATCGAT 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 965
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 4 cut(s) 339, 363, 957, 1086
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 1020, 1050
Bsc4I CCNNNNNNNGG 4 cut(s) 368, 1092, 1256, 1349
Bse118I RCCGGY 1 cut(s) 187
Bse3DI GCAATG 4 cut(s) 418, 613, 1063, 1147
BseBI CCWGG 2 cut(s) 236, 554
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 4 cut(s) 339, 363, 957, 1086
BseGI GGATG 3 cut(s) 141, 953, 1310
BseLI CCNNNNNNNGG 4 cut(s) 368, 1092, 1256, 1349
BseMI GCAATG 4 cut(s) 418, 613, 1063, 1147
BseMII CTCAG 2 cut(s) 761, 877
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 736
BseXI GCAGC 3 cut(s) 17, 55, 810
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 4 cut(s) 344, 372, 393, 534
BshVI ATCGAT 1 cut(s) 405
BsiHKAI GWGCWC 2 cut(s) 354, 827
BsiSI CCGG 2 cut(s) 188, 314
BslFI GGGAC 5 cut(s) 869, 1026, 1231, 1341, 1366
BslI CCNNNNNNNGG 4 cut(s) 368, 1092, 1256, 1349
BsmAI GTCTC 3 cut(s) 380, 437, 838
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 5 cut(s) 869, 1026, 1231, 1341, 1366
BsnI GGCC 4 cut(s) 344, 372, 393, 534
Bso31I GGTCTC 1 cut(s) 437
Bsp1286I GDGCHC 3 cut(s) 354, 736, 827
Bsp143I GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
Bsp19I CCATGG 1 cut(s) 1086
BspACI CCGC 7 cut(s) 140, 317, 416, 440, 582, 704, 743
BspANI GGCC 4 cut(s) 344, 372, 393, 534
BspCNI CTCAG 2 cut(s) 760, 876
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 4 cut(s) 392, 857, 1247, 1329
BspMAI CTGCAG 1 cut(s) 800
BspMI ACCTGC 2 cut(s) 553, 923
BspPI GGATC 2 cut(s) 65, 1104
BspQI GCTCTTC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 437
BsrDI GCAATG 4 cut(s) 418, 613, 1063, 1147
BsrFI RCCGGY 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 4 cut(s) 339, 363, 957, 1086
BssMI GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
BssSI CACGAG 2 cut(s) 347, 672
BssT1I CCWWGG 4 cut(s) 339, 363, 957, 1086
Bst2BI CACGAG 2 cut(s) 347, 672
Bst2UI CCWGG 2 cut(s) 236, 554
Bst4CI ACNGT 4 cut(s) 293, 812, 832, 904
Bst6I CTCTTC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 3 cut(s) 330, 370, 425
BstDEI CTNAG 4 cut(s) 469, 747, 863, 885
BstDSI CCRYGG 1 cut(s) 1086
BstF5I GGATG 3 cut(s) 141, 953, 1310
BstFNI CGCG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 7 cut(s) 73, 286, 405, 982, 1099, 1178, 1210
BstMAI GTCTC 3 cut(s) 380, 437, 838
BstMBI GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
BstMWI GCNNNNNNNGC 2 cut(s) 959, 1420
BstNI CCWGG 2 cut(s) 236, 554
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 234, 312, 552
BstSFI CTRYAG 3 cut(s) 292, 796, 910
BstSLI GKGCMC 1 cut(s) 736
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 3 cut(s) 17, 55, 810
BstX2I RGATCY 1 cut(s) 1096
BstYI RGATCY 1 cut(s) 1096
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 4 cut(s) 344, 372, 393, 534
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 1086
BtsCI GGATG 3 cut(s) 141, 953, 1310
BtsIMutI CAGTG 1 cut(s) 486
BveI ACCTGC 2 cut(s) 553, 923
Cac8I GCNNGC 3 cut(s) 330, 370, 425
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 7 cut(s) 112, 232, 343, 391, 856, 1245, 1328
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 3 cut(s) 230, 253, 1301
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 1 cut(s) 763
CspCI CAANNNNNGTGG 4 cut(s) 436, 471, 565, 600
CviAII CATG 6 cut(s) 151, 256, 657, 938, 1087, 1116
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 4 cut(s) 469, 747, 863, 885
DpnI GATC 7 cut(s) 72, 285, 404, 981, 1098, 1177, 1209
DpnII GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
EciI GGCGGA 3 cut(s) 155, 455, 693
Eco130I CCWWGG 4 cut(s) 339, 363, 957, 1086
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 5 cut(s) 112, 232, 856, 1245, 1328
Eco57I CTGAAG 1 cut(s) 1184
Eco72I CACGTG 1 cut(s) 965
EcoO109I RGGNCCY 4 cut(s) 112, 343, 1245, 1328
EcoRI GAATTC 1 cut(s) 1338
EcoRII CCWGG 2 cut(s) 234, 552
EcoT14I CCWWGG 4 cut(s) 339, 363, 957, 1086
ErhI CCWWGG 4 cut(s) 339, 363, 957, 1086
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 6 cut(s) 154, 259, 660, 941, 1090, 1119
FaqI GGGAC 5 cut(s) 869, 1026, 1231, 1341, 1366
FatI CATG 6 cut(s) 150, 255, 656, 937, 1086, 1115
FauI CCCGC 1 cut(s) 750
FauNDI CATATG 1 cut(s) 1425
FbaI TGATCA 2 cut(s) 283, 979
FblI GTMKAC 2 cut(s) 267, 1312
Fnu4HI GCNGC 3 cut(s) 31, 44, 799
FokI GGATG 3 cut(s) 148, 940, 1317
Fsp4HI GCNGC 3 cut(s) 31, 44, 799
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 31, 44, 799
HaeIII GGCC 4 cut(s) 344, 372, 393, 534
HapII CCGG 2 cut(s) 188, 314
HgaI GACGC 3 cut(s) 230, 253, 1301
HhaI GCGC 1 cut(s) 334
Hin1II CATG 6 cut(s) 154, 259, 660, 941, 1090, 1119
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 3 cut(s) 457, 907, 1313
HindII GTYRAC 3 cut(s) 457, 907, 1313
HinfI GANTC 2 cut(s) 170, 1235
HpaII CCGG 2 cut(s) 188, 314
HphI GGTGA 2 cut(s) 169, 193
Hpy166II GTNNAC 5 cut(s) 268, 457, 907, 968, 1313
Hpy188I TCNGA 4 cut(s) 207, 664, 845, 1304
Hpy188III TCNNGA 4 cut(s) 151, 683, 871, 1020
Hpy8I GTNNAC 5 cut(s) 268, 457, 907, 968, 1313
Hpy99I CGWCG 2 cut(s) 246, 1295
HpyAV CCTTC 2 cut(s) 139, 148
HpyCH4III ACNGT 4 cut(s) 293, 812, 832, 904
HpyCH4IV ACGT 3 cut(s) 756, 964, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 959, 1420
HpyF3I CTNAG 4 cut(s) 469, 747, 863, 885
HpySE526I ACGT 3 cut(s) 756, 964, 1015
Hsp92II CATG 6 cut(s) 154, 259, 660, 941, 1090, 1119
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 283, 979
Kzo9I GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
LguI GCTCTTC 1 cut(s) 359
Lsp1109I GCAGC 3 cut(s) 17, 55, 810
LweI GCATC 2 cut(s) 189, 962
MabI ACCWGGT 1 cut(s) 234
MaeII ACGT 3 cut(s) 756, 964, 1015
MaeIII GTNAC 2 cut(s) 565, 609
MalI GATC 7 cut(s) 72, 285, 404, 981, 1098, 1177, 1209
MboI GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
MboII GAAGA 3 cut(s) 298, 346, 902
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 3 cut(s) 354, 736, 827
MluCI AATT 4 cut(s) 77, 1165, 1182, 1338
MmeI TCCRAC 2 cut(s) 249, 642
MseI TTAA 2 cut(s) 81, 1158
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 188, 314
MspR9I CCNGG 3 cut(s) 236, 314, 554
MunI CAATTG 1 cut(s) 1182
MvaI CCWGG 2 cut(s) 236, 554
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 2 cut(s) 959, 1420
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 1086
NdeI CATATG 1 cut(s) 1425
NdeII GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
NlaIII CATG 6 cut(s) 154, 259, 660, 941, 1090, 1119
NlaIV GGNNCC 4 cut(s) 392, 857, 1247, 1329
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 565, 609
NspI RCATGY 1 cut(s) 259
PagI TCATGA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 170, 1235
PkrI GCNGC 3 cut(s) 32, 45, 800
PmaCI CACGTG 1 cut(s) 965
PmlI CACGTG 1 cut(s) 965
Ppu21I YACGTR 1 cut(s) 965
PpuMI RGGWCCY 3 cut(s) 112, 1245, 1328
PsiI TTATAA 1 cut(s) 650
Psp1406I AACGTT 1 cut(s) 756
Psp5II RGGWCCY 3 cut(s) 112, 1245, 1328
Psp6I CCWGG 2 cut(s) 234, 552
PspCI CACGTG 1 cut(s) 965
PspGI CCWGG 2 cut(s) 234, 552
PspN4I GGNNCC 4 cut(s) 392, 857, 1247, 1329
PspPI GGNCC 7 cut(s) 112, 232, 343, 391, 856, 1245, 1328
PspPPI RGGWCCY 3 cut(s) 112, 1245, 1328
PstI CTGCAG 1 cut(s) 800
PsuI RGATCY 1 cut(s) 1096
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 1 cut(s) 155
SalI GTCGAC 1 cut(s) 1311
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 2 cut(s) 81, 1158
SatI GCNGC 3 cut(s) 31, 44, 799
Sau3AI GATC 7 cut(s) 70, 283, 402, 979, 1096, 1175, 1207
Sau96I GGNCC 7 cut(s) 112, 232, 343, 391, 856, 1245, 1328
ScrFI CCNGG 3 cut(s) 236, 314, 554
SduI GDGCHC 3 cut(s) 354, 736, 827
SexAI ACCWGGT 1 cut(s) 234
SfaNI GCATC 2 cut(s) 189, 962
SfcI CTRYAG 3 cut(s) 292, 796, 910
SinI GGWCC 5 cut(s) 112, 232, 856, 1245, 1328
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 2 cut(s) 377, 1193
SmoI CTYRAG 2 cut(s) 377, 1193
Sse9I AATT 4 cut(s) 77, 1165, 1182, 1338
SsiI CCGC 7 cut(s) 140, 317, 416, 440, 582, 704, 743
SspI AATATT 2 cut(s) 700, 1255
StyD4I CCNGG 3 cut(s) 234, 312, 552
StyI CCWWGG 4 cut(s) 339, 363, 957, 1086
TaaI ACNGT 4 cut(s) 293, 812, 832, 904
TaiI ACGT 3 cut(s) 759, 967, 1018
TaqI TCGA 4 cut(s) 97, 309, 405, 1312
TasI AATT 4 cut(s) 77, 1165, 1182, 1338
TfiI GAWTC 2 cut(s) 170, 1235
Tru1I TTAA 2 cut(s) 81, 1158
Tru9I TTAA 2 cut(s) 81, 1158
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 2 cut(s) 565, 609
TseI GCWGC 3 cut(s) 30, 43, 798
Tsp45I GTSAC 2 cut(s) 565, 609
TspDTI ATGAA 2 cut(s) 167, 1442
TspGWI ACGGA 1 cut(s) 517
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 5 cut(s) 112, 232, 856, 1245, 1328
XapI RAATTY 2 cut(s) 77, 1338
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 2 cut(s) 232, 1084
XmiI GTMKAC 2 cut(s) 267, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.