Rtr1/RPAP2 family
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom04g16740 pycom12g18870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 97, 110, 210 |
| AcsI | RAATTY | 1 cut(s) | 233 |
| AdeI | CACNNNGTG | 1 cut(s) | 154 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 113 |
| AluBI | AGCT | 2 cut(s) | 193, 242 |
| AluI | AGCT | 2 cut(s) | 193, 242 |
| Alw21I | GWGCWC | 1 cut(s) | 229 |
| AlwI | GGATC | 3 cut(s) | 97, 110, 210 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApoI | RAATTY | 1 cut(s) | 233 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 78, 110 |
| AspA2I | CCTAGG | 1 cut(s) | 217 |
| AspS9I | GGNCC | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 116 |
| AvrII | CCTAGG | 1 cut(s) | 217 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 1 cut(s) | 229 |
| BccI | CCATC | 1 cut(s) | 155 |
| BfaI | CTAG | 1 cut(s) | 218 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BlnI | CCTAGG | 1 cut(s) | 217 |
| Bme18I | GGWCC | 1 cut(s) | 116 |
| BmgT120I | GGNCC | 1 cut(s) | 116 |
| BmiI | GGNNCC | 2 cut(s) | 104, 166 |
| BmsI | GCATC | 2 cut(s) | 16, 129 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 74, 106 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 1 cut(s) | 217 |
| BseGI | GGATG | 2 cut(s) | 144, 166 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BseMII | CTCAG | 2 cut(s) | 252, 257 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 229 |
| BsiSI | CCGG | 1 cut(s) | 128 |
| BslFI | GGGAC | 2 cut(s) | 22, 99 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 113 |
| BsmFI | GGGAC | 2 cut(s) | 22, 99 |
| BsmI | GAATGC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 1 cut(s) | 229 |
| Bsp143I | GATC | 2 cut(s) | 102, 202 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspCNI | CTCAG | 2 cut(s) | 251, 256 |
| BspLI | GGNNCC | 2 cut(s) | 104, 166 |
| BspPI | GGATC | 3 cut(s) | 97, 110, 210 |
| BssECI | CCNNGG | 1 cut(s) | 217 |
| BssMI | GATC | 2 cut(s) | 102, 202 |
| BssT1I | CCWWGG | 1 cut(s) | 217 |
| BstC8I | GCNNGC | 1 cut(s) | 125 |
| BstDEI | CTNAG | 2 cut(s) | 238, 243 |
| BstF5I | GGATG | 2 cut(s) | 144, 166 |
| BstKTI | GATC | 2 cut(s) | 105, 205 |
| BstMBI | GATC | 2 cut(s) | 102, 202 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 35 |
| BstNSI | RCATGY | 1 cut(s) | 127 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtsCI | GGATG | 2 cut(s) | 144, 166 |
| Cac8I | GCNNGC | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 1 cut(s) | 116 |
| CviAII | CATG | 1 cut(s) | 124 |
| CviJI | RGCY | 3 cut(s) | 193, 222, 242 |
| CviKI_1 | RGCY | 3 cut(s) | 193, 222, 242 |
| DdeI | CTNAG | 2 cut(s) | 238, 243 |
| DpnI | GATC | 2 cut(s) | 104, 204 |
| DpnII | GATC | 2 cut(s) | 102, 202 |
| DraIII | CACNNNGTG | 1 cut(s) | 154 |
| Eco130I | CCWWGG | 1 cut(s) | 217 |
| Eco47I | GGWCC | 1 cut(s) | 116 |
| EcoRI | GAATTC | 1 cut(s) | 233 |
| EcoT14I | CCWWGG | 1 cut(s) | 217 |
| ErhI | CCWWGG | 1 cut(s) | 217 |
| FaeI | CATG | 1 cut(s) | 127 |
| FaiI | YATR | 4 cut(s) | 125, 197, 207, 209 |
| FaqI | GGGAC | 2 cut(s) | 22, 99 |
| FatI | CATG | 1 cut(s) | 123 |
| FokI | GGATG | 2 cut(s) | 151, 173 |
| FspBI | CTAG | 1 cut(s) | 218 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HapII | CCGG | 1 cut(s) | 128 |
| Hin1II | CATG | 1 cut(s) | 127 |
| HinfI | GANTC | 1 cut(s) | 87 |
| HpaII | CCGG | 1 cut(s) | 128 |
| Hpy188I | TCNGA | 3 cut(s) | 44, 169, 246 |
| HpyAV | CCTTC | 2 cut(s) | 129, 193 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 99, 110, 123 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 35 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 243 |
| Hsp92II | CATG | 1 cut(s) | 127 |
| Kzo9I | GATC | 2 cut(s) | 102, 202 |
| LpnPI | CCDG | 5 cut(s) | 48, 85, 120, 141, 143 |
| LweI | GCATC | 2 cut(s) | 16, 129 |
| MaeI | CTAG | 1 cut(s) | 218 |
| MalI | GATC | 2 cut(s) | 104, 204 |
| MboI | GATC | 2 cut(s) | 102, 202 |
| MboII | GAAGA | 1 cut(s) | 62 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MhlI | GDGCHC | 1 cut(s) | 229 |
| MluCI | AATT | 1 cut(s) | 233 |
| MlyI | GAGTC | 1 cut(s) | 81 |
| MnlI | CCTC | 1 cut(s) | 76 |
| MseI | TTAA | 1 cut(s) | 256 |
| MspI | CCGG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 38 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 35 |
| NdeII | GATC | 2 cut(s) | 102, 202 |
| NlaIII | CATG | 1 cut(s) | 127 |
| NlaIV | GGNNCC | 2 cut(s) | 104, 166 |
| NmeAIII | GCCGAG | 1 cut(s) | 248 |
| NspI | RCATGY | 1 cut(s) | 127 |
| PaeI | GCATGC | 1 cut(s) | 127 |
| PctI | GAATGC | 1 cut(s) | 38 |
| PleI | GAGTC | 1 cut(s) | 81 |
| PpsI | GAGTC | 1 cut(s) | 81 |
| PspN4I | GGNNCC | 2 cut(s) | 104, 166 |
| PspPI | GGNCC | 1 cut(s) | 116 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| SaqAI | TTAA | 1 cut(s) | 256 |
| Sau3AI | GATC | 2 cut(s) | 102, 202 |
| Sau96I | GGNCC | 1 cut(s) | 116 |
| SchI | GAGTC | 1 cut(s) | 81 |
| SduI | GDGCHC | 1 cut(s) | 229 |
| SetI | ASST | 3 cut(s) | 156, 195, 244 |
| SfaNI | GCATC | 2 cut(s) | 16, 129 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SinI | GGWCC | 1 cut(s) | 116 |
| SmlI | CTYRAG | 1 cut(s) | 80 |
| SmoI | CTYRAG | 1 cut(s) | 80 |
| SphI | GCATGC | 1 cut(s) | 127 |
| Sse9I | AATT | 1 cut(s) | 233 |
| SspMI | CTAG | 1 cut(s) | 218 |
| StyI | CCWWGG | 1 cut(s) | 217 |
| TasI | AATT | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 256 |
| Tru9I | TTAA | 1 cut(s) | 256 |
| TspDTI | ATGAA | 2 cut(s) | 62, 212 |
| VpaK11BI | GGWCC | 1 cut(s) | 116 |
| XapI | RAATTY | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 127 |
| XmaJI | CCTAGG | 1 cut(s) | 217 |
| XspI | CTAG | 1 cut(s) | 218 |