Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0026658

Physical Location & Seq

Genomic Coordinates Forward (+)

20917067 .. 20918373

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGCTGCATGTTGGAGACGATGACTTTTGTTGACGCGCTACCAGCTTTCAGAATGAAACAATGGAAAGTGGTTGTTCTTCTTCTCCTTGAAGGTCTCTCTGTTTGCAGGATTCCTGCACTCAGTCCTCACATGCCAGATAGAAGGACACTGTTTGACAAGGTGCTGGATGGTTCACAGATAACTGCAGAACACTACGAGCTTATGAAGGATCATATGTTACCCCTAGGCCGAGCACCCGAATTCTCAGCTCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

89

Amino Acids

9.92

Weight (kDa)

6.25

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026658)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g16740 pycom12g18870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	4 cut(s)	6, 47, 202, 251
AluI	AGCT	4 cut(s)	6, 47, 202, 251
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	11, 101
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	242
AspA2I	CCTAGG	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	40
AvrII	CCTAGG	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	11, 101
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	1 cut(s)	7
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	226
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	136, 261, 266
BsgI	GTGCAG	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	11, 101
BsmBI	CGTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	135, 260, 265
BspFNI	CGCG	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	122, 247, 252
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	11, 101
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNSI	RCATGY	2 cut(s)	13, 136
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	149
CfoI	GCGC	1 cut(s)	40
CseI	GACGC	1 cut(s)	44
CviAII	CATG	2 cut(s)	10, 133
CviJI	RGCY	5 cut(s)	6, 47, 202, 231, 251
CviKI_1	RGCY	5 cut(s)	6, 47, 202, 231, 251
DdeI	CTNAG	3 cut(s)	122, 247, 252
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	2 cut(s)	13, 136
FaiI	YATR	5 cut(s)	11, 134, 206, 216, 218
FatI	CATG	2 cut(s)	9, 132
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	13, 136
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	112
Hpy166II	GTNNAC	2 cut(s)	34, 176
Hpy188I	TCNGA	2 cut(s)	53, 255
Hpy8I	GTNNAC	2 cut(s)	34, 176
HpyAV	CCTTC	3 cut(s)	86, 138, 202
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	9, 108, 119, 188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	3 cut(s)	122, 247, 252
Hsp92II	CATG	2 cut(s)	13, 136
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	5 cut(s)	57, 94, 129, 150, 152
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	71, 74
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	242
MnlI	CCTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	265
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	2 cut(s)	13, 136
NmeAIII	GCCGAG	1 cut(s)	257
NspI	RCATGY	2 cut(s)	13, 136
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	8
PstI	CTGCAG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	265
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	6 cut(s)	8, 49, 97, 165, 204, 253
SfcI	CTRYAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	242
SspMI	CTAG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	153
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	2 cut(s)	71, 221
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	2 cut(s)	13, 136
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.