Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007605

Physical Location & Seq

Genomic Coordinates Forward (+)

2257504 .. 2261976

Gene Structure 4473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01920.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGAAGCAATGGGGTTGACCATCCATTGAAACATTTGGAAGAGGAAGGCGGTAGCAGCCAAGGACAGAGTTCTTTTCAGCAGGAGAGGAATCAGAAGAGAAATTCTTCACGGCCTTCTTCGGTTTTAGAGATTTTTCAGGCAAAAGAGTTCAATGTTGGTTCTTCACCTCGGAGAGGCTTGGACCATTCAATCACGGCACCAATTGGCACTCCCAAAGGTTTGCTGATTGAGGATCATCCTTTTTCGGAGATTAGATTCCCTAGATCCAGGACGGAGAGGAAGGGAAGGCATGACTTAAAGTTGGATAGACTGTCAGAGCGTGAAAAGAGAAAACTAATTGTTGAGATGGTCAAGATACAAAACGATGGAACGGTAGAAGTTGATTTGGAAAAAAGTGCACCTGTTGCCTCTGAGTTCTTAGAGCTCCACACTGTTGAAGATGTGTCCATCAATCTTGATGATATGCCTTCCAATACCATCAAGTCAATTCCAAGGTTGAAAATTTGCATACTTGTGGTTGGAACAAGAGGAGATGTACAGGCTTTCCTGGCTATGGCAAAGAGATTTCAGGAGTTTGGCCATCATGTTAGGTTGGCAACTCATGCGAACTTTAGCTCTTTTGTGAAGTCGGCTGGTGTAGACTTTTATCCATTGGGTGGTGATCCTCGCGTTTTGATAGGATATATGACCAAAAATAAAGGTCTCATTCCATCCGGCCGAGAAGAAATATCAATACAAAGAAAGCAACTGAAGGCAATTATTGAATCTCTTCTTCCAGCATGCACAGAACCAGATATAGAAACTGGTGTGCCCTTTAAGGCACAGGCAATTATTGCAAACCCTCCTGCTTATGGACATGCTCATGTTGCGGAAGCTCTTGGAGTACCCCTTCATATTTTCTTCACAATGCCATGGACGCCTACTTATAAATTTCCTCACCCGCTGGCACGTGTACCTCAAAGTGCTGGTTATTGGATTTCATACATTATTGTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009791 GO:0009812 GO:0009813 GO:0009845 GO:0010154 GO:0010214 GO:0015020 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0031090 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051505 GO:0051506 GO:0051507 GO:0051508 GO:0051509 GO:0061458 GO:0071704 GO:0080043 GO:0080044 GO:0090351 GO:0098588 GO:0098805 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

334

Amino Acids

37.09

Weight (kDa)

8.42

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007605)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43620 AT1G43620 AT1G43620 AT1G43620 AT1G43620 AT1G43620 AT1G43620 AT1G43620
fragaria_vesca	FvH4_2g13560 FvH4_2g13560
malus_domestica	MD05G1027200.v1.1 MD10G1026500.v1.1
prunus_persica	Prupe.8G032700_v2.0.a1
pyrus_communis	pycom05g01920 pycom10g01800
rosa_chinensis	RchiOBHm_Chr6g0275171
rosa_laevigata	RLG00000013490
rosa_multiflora	Rmu_ssc0000041.1_g000016
rosa_roxburghii	Rroxscaffold_7G00193580
rosa_rugosa	Rorug06G0089200 Rorug06G0089200
rosa_samantha	Rh6AG203200 Rh6DG198500
rosa_wichuraiana	Rw6G017630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	672
AciI	CCGC	3 cut(s)	51, 872, 944
AclWI	GGATC	3 cut(s)	243, 261, 659
AcoI	YGGCCR	2 cut(s)	580, 718
AcsI	RAATTY	3 cut(s)	103, 504, 932
AcuI	CTGAAG	1 cut(s)	773
AcvI	CACGTG	1 cut(s)	953
AcyI	GRCGYC	1 cut(s)	920
AfaI	GTAC	3 cut(s)	540, 888, 957
AfiI	CCNNNNNNNGG	4 cut(s)	176, 556, 659, 854
AflIII	ACRYGT	1 cut(s)	952
AgsI	TTSAA	6 cut(s)	31, 154, 192, 440, 502, 767
AjnI	CCWGG	2 cut(s)	269, 549
AluBI	AGCT	3 cut(s)	427, 618, 878
AluI	AGCT	3 cut(s)	427, 618, 878
Alw21I	GWGCWC	2 cut(s)	403, 429
Alw26I	GTCTC	1 cut(s)	710
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	3 cut(s)	243, 261, 659
AoxI	GGCC	3 cut(s)	113, 580, 718
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	3 cut(s)	103, 504, 932
Asp700I	GAANNNNTTC	2 cut(s)	106, 771
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	3 cut(s)	159, 674, 932
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	2 cut(s)	403, 816
BalI	TGGCCA	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	429
BbrPI	CACGTG	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	403, 429
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	7 cut(s)	30, 343, 362, 458, 488, 591, 721
BceAI	ACGGC	2 cut(s)	128, 213
BciT130I	CCWGG	2 cut(s)	271, 551
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	271, 551
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	271, 551
BsaAI	YACGTR	1 cut(s)	953
BsaHI	GRCGYC	1 cut(s)	920
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	4 cut(s)	61, 170, 494, 914
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 556, 659, 854
Bse1I	ACTGG	1 cut(s)	811
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	271, 551
BseDI	CCNNGG	4 cut(s)	61, 170, 494, 914
BseGI	GGATG	3 cut(s)	22, 238, 713
BseLI	CCNNNNNNNGG	4 cut(s)	176, 556, 659, 854
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	1 cut(s)	546
BseSI	GKGCMC	2 cut(s)	403, 816
BseX3I	CGGCCG	1 cut(s)	718
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	672
Bsh1285I	CGRYCG	1 cut(s)	721
BshFI	GGCC	3 cut(s)	115, 582, 720
BshNI	GGYRCC	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	721
BsiHKAI	GWGCWC	2 cut(s)	403, 429
BsiSI	CCGG	1 cut(s)	717
BslI	CCNNNNNNNGG	4 cut(s)	176, 556, 659, 854
BsmAI	GTCTC	1 cut(s)	710
BsnI	GGCC	3 cut(s)	115, 582, 720
Bso31I	GGTCTC	1 cut(s)	710
Bsp1286I	GDGCHC	3 cut(s)	403, 429, 816
Bsp1407I	TGTACA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	235, 266, 664
Bsp19I	CCATGG	1 cut(s)	914
BspACI	CCGC	3 cut(s)	51, 872, 944
BspANI	GGCC	3 cut(s)	115, 582, 720
BspCNI	CTCAG	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	3 cut(s)	243, 261, 659
BspT107I	GGYRCC	1 cut(s)	199
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	538
BsrI	ACTGG	1 cut(s)	811
BssECI	CCNNGG	4 cut(s)	61, 170, 494, 914
BssMI	GATC	3 cut(s)	235, 266, 664
BssNI	GRCGYC	1 cut(s)	920
BssT1I	CCWWGG	3 cut(s)	61, 494, 914
Bst2UI	CCWGG	2 cut(s)	271, 551
Bst4CI	ACNGT	3 cut(s)	315, 376, 436
Bst6I	CTCTTC	3 cut(s)	36, 92, 777
BstACI	GRCGYC	1 cut(s)	920
BstAPI	GCANNNNNTGC	3 cut(s)	407, 605, 836
BstAUI	TGTACA	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	953
BstC8I	GCNNGC	2 cut(s)	784, 948
BstDEI	CTNAG	2 cut(s)	414, 421
BstDSI	CCRYGG	1 cut(s)	914
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	22, 238, 713
BstFNI	CGCG	1 cut(s)	672
BstKTI	GATC	3 cut(s)	238, 269, 667
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	3 cut(s)	235, 266, 664
BstMCI	CGRYCG	1 cut(s)	721
BstMWI	GCNNNNNNNGC	7 cut(s)	57, 407, 551, 605, 836, 869, 919
BstNI	CCWGG	2 cut(s)	271, 551
BstNSI	RCATGY	2 cut(s)	786, 863
BstSCI	CCNGG	2 cut(s)	269, 549
BstSLI	GKGCMC	2 cut(s)	403, 816
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	115, 582, 720
BtgI	CCRYGG	1 cut(s)	914
BtsCI	GGATG	3 cut(s)	22, 238, 713
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	2 cut(s)	784, 948
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	928
Csp6I	GTAC	3 cut(s)	539, 887, 956
CviAII	CATG	7 cut(s)	293, 587, 605, 783, 860, 866, 915
CviQI	GTAC	3 cut(s)	539, 887, 956
DdeI	CTNAG	2 cut(s)	414, 421
DpnI	GATC	3 cut(s)	237, 268, 666
DpnII	GATC	3 cut(s)	235, 266, 664
EaeI	YGGCCR	2 cut(s)	580, 718
EagI	CGGCCG	1 cut(s)	718
Eam1104I	CTCTTC	3 cut(s)	36, 92, 777
EarI	CTCTTC	3 cut(s)	36, 92, 777
Ecl136II	GAGCTC	1 cut(s)	427
EclXI	CGGCCG	1 cut(s)	718
Eco130I	CCWWGG	3 cut(s)	61, 494, 914
Eco24I	GRGCYC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	184
Eco52I	CGGCCG	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	773
Eco72I	CACGTG	1 cut(s)	953
EcoICRI	GAGCTC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	269, 549
EcoT14I	CCWWGG	3 cut(s)	61, 494, 914
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	3 cut(s)	61, 494, 914
FaeI	CATG	7 cut(s)	296, 590, 608, 786, 863, 869, 918
FatI	CATG	7 cut(s)	292, 586, 604, 782, 859, 865, 914
FauI	CCCGC	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	3 cut(s)	9, 225, 700
FriOI	GRGCYC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	58
HaeIII	GGCC	3 cut(s)	115, 582, 720
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	1 cut(s)	928
Hin1I	GRCGYC	1 cut(s)	920
Hin1II	CATG	7 cut(s)	296, 590, 608, 786, 863, 869, 918
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	91, 258, 767
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	159, 674, 932
Hpy166II	GTNNAC	4 cut(s)	19, 401, 643, 956
Hpy188I	TCNGA	5 cut(s)	96, 174, 250, 319, 415
Hpy188III	TCNNGA	3 cut(s)	355, 458, 572
Hpy8I	GTNNAC	4 cut(s)	19, 401, 643, 956
HpyAV	CCTTC	7 cut(s)	41, 126, 277, 282, 480, 748, 902
HpyCH4III	ACNGT	3 cut(s)	315, 376, 436
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	4 cut(s)	401, 510, 786, 839
HpyF10VI	GCNNNNNNNGC	7 cut(s)	57, 407, 551, 605, 836, 869, 919
HpyF3I	CTNAG	2 cut(s)	414, 421
HpySE526I	ACGT	1 cut(s)	952
Hsp92I	GRCGYC	1 cut(s)	920
Hsp92II	CATG	7 cut(s)	296, 590, 608, 786, 863, 869, 918
Kzo9I	GATC	3 cut(s)	235, 266, 664
LmnI	GCTCC	1 cut(s)	432
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	952
MalI	GATC	3 cut(s)	237, 268, 666
MboI	GATC	3 cut(s)	235, 266, 664
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	3 cut(s)	403, 429, 816
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	8 cut(s)	103, 204, 339, 489, 504, 759, 831, 932
MluNI	TGGCCA	1 cut(s)	582
MmeI	TCCRAC	2 cut(s)	285, 502
Mox20I	TGGCCA	1 cut(s)	582
MroXI	GAANNNNTTC	2 cut(s)	106, 771
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	2 cut(s)	299, 819
MslI	CAYNNNNRTG	3 cut(s)	515, 864, 992
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	2 cut(s)	271, 551
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	271, 551
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	7 cut(s)	57, 407, 551, 605, 836, 869, 919
NcoI	CCATGG	1 cut(s)	914
NdeII	GATC	3 cut(s)	235, 266, 664
NlaIII	CATG	7 cut(s)	296, 590, 608, 786, 863, 869, 918
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	1 cut(s)	746
NspI	RCATGY	2 cut(s)	786, 863
PaeI	GCATGC	1 cut(s)	786
PdmI	GAANNNNTTC	2 cut(s)	106, 771
PfeI	GAWTC	3 cut(s)	91, 258, 767
PflMI	CCANNNNNTGG	1 cut(s)	659
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	953
PmlI	CACGTG	1 cut(s)	953
Ppu21I	YACGTR	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	269, 549
PspCI	CACGTG	1 cut(s)	953
PspGI	CCWGG	2 cut(s)	269, 549
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	3 cut(s)	540, 888, 957
RsaNI	GTAC	3 cut(s)	539, 887, 956
RseI	CAYNNNNRTG	3 cut(s)	515, 864, 992
SacI	GAGCTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	299, 819
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	235, 266, 664
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	2 cut(s)	271, 551
SduI	GDGCHC	3 cut(s)	403, 429, 816
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	3 cut(s)	515, 864, 992
SphI	GCATGC	1 cut(s)	786
Sse9I	AATT	8 cut(s)	103, 204, 339, 489, 504, 759, 831, 932
SsiI	CCGC	3 cut(s)	51, 872, 944
SspMI	CTAG	1 cut(s)	264
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	269, 549
StyI	CCWWGG	3 cut(s)	61, 494, 914
TaaI	ACNGT	3 cut(s)	315, 376, 436
TaiI	ACGT	1 cut(s)	955
TasI	AATT	8 cut(s)	103, 204, 339, 489, 504, 759, 831, 932
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	3 cut(s)	91, 258, 767
Tru1I	TTAA	2 cut(s)	299, 819
Tru9I	TTAA	2 cut(s)	299, 819
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	884, 972
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	3 cut(s)	103, 504, 932
XceI	RCATGY	2 cut(s)	786, 863
XmiI	GTMKAC	1 cut(s)	642
XmnI	GAANNNNTTC	2 cut(s)	106, 771
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.