Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029267

Physical Location & Seq

Genomic Coordinates Forward (+)

3702672 .. 3703199

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCACCGTTACGGTCTGGTCCAGCTTCGACAACCCCACCGATTCGATCGATCCCCGGGCAGAACTTCACTGTGAGTAAGGTTTTGCGGTCTGGGTTGTACTCGTTTAAGCTTGTAAAAAAGGGGAACCTTACACTTTTGTGGAATGATATTACTGTGTATTGGAATCAGGGATTGAATTCTTCTGTTAATACGAATTTGAGTTCGCCTACTCTAGGATTGCGGTCAATTGGTATTCTGTCAATTTCTGATCCACAATTGTCCACTGATGCTATTGTTGCTTATAGTAGTGATTATGCCGAAGCGGGTGATATTTTGCGGTTTTTGAAGTTGGGGAGTGATGGGAATCTGAGGATTTATAGCTCTACTAGAGGTAGCGGGACTGTAACAGAGAGATGGGCAGCTGTTACTGATCAGTGTGAGGTTTTCGGGTATTGTGGGGACATGGGAGTTTGTAGTTATAACGATACTGATCCGGTATGCGGATGTATGTCTCTTAATTTTGAGCTTGATCGATCCCAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

176

Amino Acids

18.87

Weight (kDa)

5.33

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	102 - 164	6.4e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029267)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g03210
rosa_chinensis	RchiOBHm_Chr6g0272501

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	6 cut(s)	88, 223, 305, 319, 378, 483
AclWI	GGATC	4 cut(s)	46, 245, 467, 510
AcsI	RAATTY	2 cut(s)	178, 196
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	215, 482
AgsI	TTSAA	2 cut(s)	178, 328
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	5 cut(s)	26, 112, 363, 404, 508
AluI	AGCT	5 cut(s)	26, 112, 363, 404, 508
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	4 cut(s)	46, 245, 467, 510
Ama87I	CYCGRG	1 cut(s)	56
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	178, 196
AspS9I	GGNCC	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	57, 58
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	2 cut(s)	335, 390
BclI	TGATCA	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	57, 58
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	215, 369
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	57, 58
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	2 cut(s)	6, 128
BmrFI	CCNGG	2 cut(s)	57, 58
BmsI	GCATC	1 cut(s)	259
BpuMI	CCSGG	2 cut(s)	57, 58
Bsa29I	ATCGAT	2 cut(s)	50, 514
BsaBI	GATNNNNATC	2 cut(s)	345, 471
BsaJI	CCNNGG	3 cut(s)	55, 56, 520
BsaWI	WCCGGW	1 cut(s)	475
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 482
Bse8I	GATNNNNATC	2 cut(s)	345, 471
BseCI	ATCGAT	2 cut(s)	50, 514
BseDI	CCNNGG	3 cut(s)	55, 56, 520
BseGI	GGATG	1 cut(s)	491
BseJI	GATNNNNATC	2 cut(s)	345, 471
BseLI	CCNNNNNNNGG	2 cut(s)	215, 482
BseMII	CTCAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	2 cut(s)	50, 514
BsiEI	CGRYCG	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	57, 476
BslFI	GGGAC	2 cut(s)	394, 455
BslI	CCNNNNNNNGG	2 cut(s)	215, 482
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	394, 455
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
BspACI	CCGC	6 cut(s)	88, 223, 305, 319, 378, 483
BspCNI	CTCAG	1 cut(s)	342
BspDI	ATCGAT	2 cut(s)	50, 514
BspLI	GGNNCC	2 cut(s)	6, 128
BspPI	GGATC	4 cut(s)	46, 245, 467, 510
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	55, 56, 520
BssMI	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	5 cut(s)	9, 15, 73, 157, 385
BstDEI	CTNAG	1 cut(s)	350
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	491
BstKTI	GATC	7 cut(s)	50, 54, 253, 415, 475, 514, 518
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstSCI	CCNGG	2 cut(s)	55, 56
BstV1I	GCAGC	1 cut(s)	413
Bsu15I	ATCGAT	2 cut(s)	50, 514
BsuTUI	ATCGAT	2 cut(s)	50, 514
BtsCI	GGATG	1 cut(s)	491
BtsIMutI	CAGTG	3 cut(s)	69, 264, 422
Cfr13I	GGNCC	1 cut(s)	20
Cfr9I	CCCGGG	1 cut(s)	56
ClaI	ATCGAT	2 cut(s)	50, 514
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	5 cut(s)	26, 112, 363, 404, 508
CviKI_1	RGCY	5 cut(s)	26, 112, 363, 404, 508
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	7 cut(s)	49, 53, 252, 414, 474, 513, 517
DpnII	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
Eco130I	CCWWGG	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	56
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	1 cut(s)	448
FaiI	YATR	7 cut(s)	285, 297, 360, 446, 462, 481, 491
FaqI	GGGAC	2 cut(s)	394, 455
FatI	CATG	1 cut(s)	444
FauI	CCCGC	2 cut(s)	298, 371
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	215, 369
GluI	GCNGC	1 cut(s)	402
HapII	CCGG	2 cut(s)	57, 476
Hin1II	CATG	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	3 cut(s)	43, 166, 346
HpaII	CCGG	2 cut(s)	57, 476
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	2 cut(s)	250, 351
Hpy8I	GTNNAC	1 cut(s)	264
HpyCH4III	ACNGT	5 cut(s)	9, 15, 73, 157, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
LpnPI	CCDG	6 cut(s)	3, 36, 70, 78, 155, 489
Lsp1109I	GCAGC	1 cut(s)	413
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	215, 369
MaeIII	GTNAC	3 cut(s)	9, 385, 406
MalI	GATC	7 cut(s)	49, 53, 252, 414, 474, 513, 517
MboI	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
MboII	GAAGA	1 cut(s)	174
MfeI	CAATTG	2 cut(s)	228, 257
MluCI	AATT	6 cut(s)	178, 196, 228, 243, 257, 499
MnlI	CCTC	3 cut(s)	345, 365, 415
MseI	TTAA	3 cut(s)	108, 189, 498
MslI	CAYNNNNRTG	1 cut(s)	139
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	57, 476
MspR9I	CCNGG	2 cut(s)	57, 58
MunI	CAATTG	2 cut(s)	228, 257
MwoI	GCNNNNNNNGC	1 cut(s)	278
NciI	CCSGG	2 cut(s)	57, 58
NdeII	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	6, 128
OliI	CACNNNNGTG	1 cut(s)	139
PfeI	GAWTC	3 cut(s)	43, 166, 346
PkrI	GCNGC	1 cut(s)	403
Ple19I	CGATCG	1 cut(s)	50
PsiI	TTATAA	1 cut(s)	462
PspN4I	GGNNCC	2 cut(s)	6, 128
PspPI	GGNCC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	139
SaqAI	TTAA	3 cut(s)	108, 189, 498
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	7 cut(s)	47, 51, 250, 412, 472, 511, 515
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	2 cut(s)	57, 58
SetI	ASST	9 cut(s)	28, 84, 114, 132, 365, 376, 406, 426, 510
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	20
SmaI	CCCGGG	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	139
Sse9I	AATT	6 cut(s)	178, 196, 228, 243, 257, 499
SsiI	CCGC	6 cut(s)	88, 223, 305, 319, 378, 483
SspMI	CTAG	2 cut(s)	215, 369
StyD4I	CCNGG	2 cut(s)	55, 56
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	5 cut(s)	9, 15, 73, 157, 385
TaqI	TCGA	4 cut(s)	29, 46, 50, 514
TasI	AATT	6 cut(s)	178, 196, 228, 243, 257, 499
TatI	WGTACW	1 cut(s)	99
TfiI	GAWTC	3 cut(s)	43, 166, 346
Tru1I	TTAA	3 cut(s)	108, 189, 498
Tru9I	TTAA	3 cut(s)	108, 189, 498
TscAI	CASTG	3 cut(s)	76, 271, 422
TseI	GCWGC	1 cut(s)	401
TspMI	CCCGGG	1 cut(s)	56
TspRI	CASTG	3 cut(s)	76, 271, 422
VpaK11BI	GGWCC	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	178, 196
XmaI	CCCGGG	1 cut(s)	56
XspI	CTAG	2 cut(s)	215, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.