pycom05g04140

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0029268
Physical Location & Seq
Forward (+)
4872812 .. 4873573
762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04140.1

Sequence Viewer

Length: 432 bp
ATGCTCCTTGATTGTTTAGAAGAATGTGAACAGGGCTTTATAGCAAATCGTGTCACGGCAATACAGGCTGGTCTAGACACCTGGCAAGCAGAGCAGATAAACAGGAAACTGTATTATCTCTCTTTCCTCTCTATAATATTCCTTCCTTTATCCATCATTACTGGAGTGTTTAGCATGAGTGTGGGGGTAATTCCATGGACGAGACAAAAAGACCCAACGTTGAAAGATGGTTTCCGTAATGTCATGTTACTCTGTGTAGCTATACTTCTTCTGGCACTTCTCTGCTTCAACTTTCCTGTTCTTTATACCCGAATAGCTGCTTGGCACAGAAGAAAAGTCATGAAGAGGAGCTGGTCCCTCAACAGGAAGTCATTCCTAAAGAGAAACCATGGAATTGGAATTCAAGAAATAAGGGGCTACCTCCGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

144

Amino Acids

16.61

Weight (kDa)

9.97

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CorA PF01544 13 - 94 9e-12 CorA-like Mg2+ transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029268)

Species Orthologous Gene IDs
pyrus_communis pycom05g04140
rosa_multiflora Rmu_sc0009411.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 424
AclI AACGTT 1 cut(s) 218
AcsI RAATTY 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 3 cut(s) 223, 289, 404
AjnI CCWGG 1 cut(s) 80
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 260, 317, 351
AluI AGCT 3 cut(s) 260, 317, 351
Alw26I GTCTC 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 371
AspS9I GGNCC 1 cut(s) 354
AvaII GGWCC 1 cut(s) 354
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 161, 221
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 194, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 82
BseDI CCNNGG 2 cut(s) 194, 388
BseLI CCNNNNNNNGG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 340
Bsp19I CCATGG 2 cut(s) 194, 388
BspACI CCGC 1 cut(s) 424
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 356
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 194, 388
BssT1I CCWWGG 2 cut(s) 194, 388
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 87
BstDSI CCRYGG 2 cut(s) 194, 388
BstMAI GTCTC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 65, 91, 423
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 395
BtgI CCRYGG 2 cut(s) 194, 388
Cac8I GCNNGC 1 cut(s) 87
CciI TCATGA 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 354
CviAII CATG 5 cut(s) 175, 195, 244, 340, 389
CviJI RGCY 6 cut(s) 36, 68, 260, 317, 351, 417
CviKI_1 RGCY 6 cut(s) 36, 68, 260, 317, 351, 417
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 2 cut(s) 194, 388
Eco47I GGWCC 1 cut(s) 354
EcoRI GAATTC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 80
EcoT14I CCWWGG 2 cut(s) 194, 388
ErhI CCWWGG 2 cut(s) 194, 388
FaeI CATG 5 cut(s) 178, 198, 247, 343, 392
FaiI YATR 9 cut(s) 41, 134, 176, 196, 245, 263, 306, 341, 390
FaqI GGGAC 1 cut(s) 340
FatI CATG 5 cut(s) 174, 194, 243, 339, 388
Fnu4HI GCNGC 1 cut(s) 318
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 5 cut(s) 178, 198, 247, 343, 392
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 3 cut(s) 74, 340, 404
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 91, 423
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 5 cut(s) 178, 198, 247, 343, 392
LmnI GCTCC 2 cut(s) 9, 348
Lsp1109I GCAGC 1 cut(s) 304
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 52, 246
MboII GAAGA 4 cut(s) 32, 260, 342, 355
MluCI AATT 3 cut(s) 189, 393, 399
MnlI CCTC 4 cut(s) 137, 339, 368, 431
MroXI GAANNNNTTC 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 65, 91, 423
NcoI CCATGG 2 cut(s) 194, 388
NlaIII CATG 5 cut(s) 178, 198, 247, 343, 392
NlaIV GGNNCC 1 cut(s) 356
NmuCI GTSAC 1 cut(s) 52
PagI TCATGA 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 371
PkrI GCNGC 1 cut(s) 319
Psp1406I AACGTT 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 318
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 82
SetI ASST 6 cut(s) 83, 221, 262, 319, 353, 423
SinI GGWCC 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 3 cut(s) 189, 393, 399
SsiI CCGC 1 cut(s) 424
SspI AATATT 1 cut(s) 138
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 2 cut(s) 194, 388
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 221
TasI AATT 3 cut(s) 189, 393, 399
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 356
TspGWI ACGGA 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 354
XapI RAATTY 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 371
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.