Rmu_sc0009411.1_g000004

CorA-like Mg2+ transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009411.1
OG0029268
Physical Location & Seq
Reverse (-)
8644 .. 9870
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009411.1_g000004.1.cds

Sequence Viewer

Length: 630 bp
atggttggatttgcaacaggtggttttgctttgaagaaacaaatgctagatgatagaagatttcctaaaatgcatctaaatctgcagcgcctcttgcaggtgattgctcatggggagcaagtttttcctcgggtcaaagaaaaatgttcttccaaacaatggttttccagtgaagatgttaactctcttgaagagctgactggacggttgaggaggctaaaggataatgtagggtttatagcaaatcgtgtcacagcaatacaggctggtctagacagctggcaagctgagcaaataaacaggaaactatattatctctctttcctttctatcgtattccttcctctatccatcattactggagtgtttggcatgaatgtgggcggagttccatggacaggacaaaacgacccaacattgaagaatggtttccgtaatgtgatgttactttgcattgttatgctacttgtggcactgctctgcttcagttttcctgctctttatacccgtatagttacttggcaaaggagaagagtcctgaggagaagctggtccctcaacaggaagtcatttctcagtagaacccatggaattggagttcaagaaagaaggggctaccttcggctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CorA

Protein Analysis

209

Amino Acids

24.09

Weight (kDa)

10.91

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029268)

Species Orthologous Gene IDs
pyrus_communis pycom05g04140
rosa_multiflora Rmu_sc0009411.1_g000004

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 88
Acc36I ACCTGC 1 cut(s) 88
AccB7I CCANNNNNTGG 1 cut(s) 159
AciI CCGC 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 469
AfiI CCNNNNNNNGG 4 cut(s) 97, 159, 398, 561
AgsI TTSAA 4 cut(s) 34, 191, 421, 602
AloI GAACNNNNNNTCC 2 cut(s) 582, 614
AluBI AGCT 4 cut(s) 196, 279, 287, 549
AluI AGCT 4 cut(s) 196, 279, 287, 549
Ama87I CYCGRG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 552
AxyI CCTNAGG 1 cut(s) 539
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 359
BfaI CTAG 2 cut(s) 47, 272
BfmI CTRYAG 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 86
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 87
Bme18I GGWCC 1 cut(s) 552
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 1 cut(s) 554
BmsI GCATC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 381
Bpu1102I GCTNAGC 1 cut(s) 288
BsaJI CCNNGG 3 cut(s) 128, 392, 586
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 159, 398, 561
Bse1I ACTGG 3 cut(s) 168, 205, 364
Bse21I CCTNAGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 128, 392, 586
BseLI CCNNNNNNNGG 4 cut(s) 97, 159, 398, 561
BseMII CTCAG 3 cut(s) 279, 530, 589
BseNI ACTGG 3 cut(s) 168, 205, 364
BseRI GAGGAG 2 cut(s) 226, 556
BseXI GCAGC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 4 cut(s) 97, 159, 398, 561
BsmFI GGGAC 1 cut(s) 538
BsoBI CYCGRG 1 cut(s) 129
Bsp1720I GCTNAGC 1 cut(s) 288
Bsp19I CCATGG 2 cut(s) 392, 586
BspACI CCGC 1 cut(s) 384
BspCNI CTCAG 3 cut(s) 280, 531, 588
BspLI GGNNCC 1 cut(s) 554
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 186
BsrI ACTGG 3 cut(s) 168, 205, 364
BssECI CCNNGG 3 cut(s) 128, 392, 586
BssT1I CCWWGG 2 cut(s) 392, 586
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 186, 526
BstC8I GCNNGC 2 cut(s) 281, 285
BstDEI CTNAG 3 cut(s) 288, 539, 575
BstDSI CCRYGG 2 cut(s) 392, 586
BstENI CCTNNNNNAGG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 94, 263, 289
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 593
Bsu36I CCTNAGG 1 cut(s) 539
BtgI CCRYGG 2 cut(s) 392, 586
BtsI GCAGTG 1 cut(s) 473
BtsIMutI CAGTG 2 cut(s) 175, 473
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 281, 285
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 552
CviAII CATG 4 cut(s) 110, 373, 393, 587
CviJI RGCY 8 cut(s) 196, 217, 266, 279, 287, 549, 615, 625
CviKI_1 RGCY 8 cut(s) 196, 217, 266, 279, 287, 549, 615, 625
DdeI CTNAG 3 cut(s) 288, 539, 575
Eam1104I CTCTTC 2 cut(s) 186, 526
EarI CTCTTC 2 cut(s) 186, 526
EciI GGCGGA 1 cut(s) 399
Eco130I CCWWGG 2 cut(s) 392, 586
Eco47I GGWCC 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 469
Eco81I CCTNAGG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 392, 586
EcoT22I ATGCAT 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 392, 586
FaeI CATG 4 cut(s) 113, 376, 396, 590
FaiI YATR 9 cut(s) 111, 239, 310, 374, 394, 461, 504, 512, 588
FaqI GGGAC 1 cut(s) 538
FatI CATG 4 cut(s) 109, 372, 392, 586
Fnu4HI GCNGC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 86
FspBI CTAG 2 cut(s) 47, 272
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 86
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 91
HhaI GCGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 113, 376, 396, 590
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 534
HpaI GTTAAC 1 cut(s) 181
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 188, 272, 538, 602
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 3 cut(s) 350, 603, 629
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 5 cut(s) 14, 73, 85, 97, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 263, 289
HpyF3I CTNAG 3 cut(s) 288, 539, 575
Hsp92II CATG 4 cut(s) 113, 376, 396, 590
HspAI GCGC 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 181
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 1 cut(s) 82
MaeI CTAG 2 cut(s) 47, 272
MaeIII GTNAC 3 cut(s) 250, 444, 514
MboII GAAGA 7 cut(s) 46, 69, 141, 185, 203, 433, 543
MluCI AATT 1 cut(s) 591
MlyI GAGTC 1 cut(s) 543
MnlI CCTC 7 cut(s) 101, 138, 204, 207, 354, 534, 566
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 2 cut(s) 377, 458
MspA1I CMGCKG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 94, 263, 289
NcoI CCATGG 2 cut(s) 392, 586
NlaIII CATG 4 cut(s) 113, 376, 396, 590
NlaIV GGNNCC 1 cut(s) 554
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 428
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 554
PspPI GGNCC 1 cut(s) 552
PstI CTGCAG 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 377, 458
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 1 cut(s) 543
SetI ASST 7 cut(s) 22, 102, 198, 281, 289, 551, 621
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 2 cut(s) 377, 458
Sse9I AATT 1 cut(s) 591
SsiI CCGC 1 cut(s) 384
SspMI CTAG 2 cut(s) 47, 272
StyI CCWWGG 2 cut(s) 392, 586
TaaI ACNGT 1 cut(s) 207
TasI AATT 1 cut(s) 591
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 175, 480
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 1 cut(s) 389
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 2 cut(s) 175, 480
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 2 cut(s) 47, 272
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.