pycom05g08630

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0024419
Physical Location & Seq
Forward (+)
11300553 .. 11300882
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGGAACTACATGCTGCTGCGCCTATGAGTATGGCAACTACTGCTTTGGATGGGGATGCTGCCCTCTAGAGTCTGCAACCTGCTGTGATGACCATTACAGCTGCTGCCCTCACGAGTACCCCGTATGCGACCTTGATGCGGGAACTTGCCGATTGAGCAAGGACAATCCATTGAGCGTGAAAGCGCTAAAGCGAACTCCTGCTAGAAGCAGCCGGCGTTTCCGCTTCCCAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000323 GO:0000932 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004842 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0005911 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010494 GO:0010498 GO:0010605 GO:0016020 GO:0016049 GO:0016567 GO:0016740 GO:0016787 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030163 GO:0031146 GO:0031224 GO:0031225 GO:0031347 GO:0031348 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0035770 GO:0036211 GO:0036464 GO:0040007 GO:0042176 GO:0042177 GO:0043161 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0048046 GO:0048364 GO:0048468 GO:0048469 GO:0048519 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051603 GO:0051704 GO:0051707 GO:0055044 GO:0060255 GO:0060560 GO:0065007 GO:0070011 GO:0070647 GO:0071695 GO:0071704 GO:0080090 GO:0080134 GO:0080147 GO:0090558 GO:0090627 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

80

Amino Acids

8.79

Weight (kDa)

7.44

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Granulin PF00396 4 - 50 2.2e-10 Granulin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024419)

Species Orthologous Gene IDs
malus_domestica MD12G1087100.v1.1
pyrus_communis pycom05g08630
rosa_samantha Rh6CG492400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 89
AciI CCGC 2 cut(s) 140, 223
AfaI GTAC 1 cut(s) 119
AfeI AGCGCT 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 139
AluBI AGCT 1 cut(s) 102
AluI AGCT 1 cut(s) 102
AlwNI CAGNNNCTG 1 cut(s) 105
Aor51HI AGCGCT 1 cut(s) 186
ApeKI GCWGC 6 cut(s) 15, 18, 60, 102, 105, 210
AspLEI GCGC 2 cut(s) 23, 187
BauI CACGAG 1 cut(s) 113
BbvI GCAGC 6 cut(s) 2, 5, 47, 89, 92, 222
BccI CCATC 1 cut(s) 45
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BfaI CTAG 2 cut(s) 68, 204
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 6 cut(s) 16, 19, 61, 103, 106, 211
BlsI GCNGC 6 cut(s) 17, 20, 62, 104, 107, 212
BmsI GCATC 2 cut(s) 47, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse118I RCCGGY 1 cut(s) 213
BseGI GGATG 2 cut(s) 56, 62
BseLI CCNNNNNNNGG 1 cut(s) 139
BseXI GCAGC 6 cut(s) 2, 5, 47, 89, 92, 222
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 139
BspACI CCGC 2 cut(s) 140, 223
BspMI ACCTGC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 215
BstF5I GGATG 2 cut(s) 56, 62
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 23, 187
BstMWI GCNNNNNNNGC 2 cut(s) 42, 156
BstNSI RCATGY 1 cut(s) 15
BstV1I GCAGC 6 cut(s) 2, 5, 47, 89, 92, 222
BtsCI GGATG 2 cut(s) 56, 62
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 105
CfoI GCGC 2 cut(s) 23, 187
Cfr10I RCCGGY 1 cut(s) 213
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 12
CviJI RGCY 2 cut(s) 102, 213
CviKI_1 RGCY 2 cut(s) 102, 213
CviQI GTAC 1 cut(s) 118
Eco47III AGCGCT 1 cut(s) 186
FaeI CATG 1 cut(s) 15
FaiI YATR 4 cut(s) 13, 27, 33, 127
FatI CATG 1 cut(s) 11
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 6 cut(s) 16, 19, 61, 103, 106, 211
FokI GGATG 2 cut(s) 63, 69
Fsp4HI GCNGC 6 cut(s) 16, 19, 61, 103, 106, 211
FspBI CTAG 2 cut(s) 68, 204
GlaI GCGC 2 cut(s) 22, 186
GluI GCNGC 6 cut(s) 16, 19, 61, 103, 106, 211
HaeII RGCGCY 1 cut(s) 188
HapII CCGG 1 cut(s) 214
HhaI GCGC 2 cut(s) 23, 187
Hin1II CATG 1 cut(s) 15
Hin6I GCGC 2 cut(s) 21, 185
HinP1I GCGC 2 cut(s) 21, 185
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 68, 113
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 156
Hsp92II CATG 1 cut(s) 15
HspAI GCGC 2 cut(s) 21, 185
KroI GCCGGC 1 cut(s) 213
KroNI GCCGGC 1 cut(s) 215
LpnPI CCDG 3 cut(s) 94, 213, 227
Lsp1109I GCAGC 6 cut(s) 2, 5, 47, 89, 92, 222
LweI GCATC 2 cut(s) 47, 127
MaeI CTAG 2 cut(s) 68, 204
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 75, 120
MroNI GCCGGC 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 42, 156
NaeI GCCGGC 1 cut(s) 215
NgoMIV GCCGGC 1 cut(s) 213
NlaIII CATG 1 cut(s) 15
NspI RCATGY 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 215
PkrI GCNGC 6 cut(s) 17, 20, 62, 104, 107, 212
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 6 cut(s) 16, 19, 61, 103, 106, 211
SchI GAGTC 1 cut(s) 80
SetI ASST 3 cut(s) 83, 104, 135
SfaNI GCATC 2 cut(s) 47, 127
SsiI CCGC 2 cut(s) 140, 223
SspMI CTAG 2 cut(s) 68, 204
TseI GCWGC 6 cut(s) 15, 18, 60, 102, 105, 210
XbaI TCTAGA 1 cut(s) 67
XceI RCATGY 1 cut(s) 15
XspI CTAG 2 cut(s) 68, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.