pycom05g09370

ribonuclease H protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
12539705 .. 12540040
336 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGGGCTTGTCTTCTCCAACTTTAACTTGGCATGATTCTCCTCCACCGTTAGCTCGTGCTGTATTATTTTCGGGCTATGTTAGCTTGTCTGACTACCACTTCTCTAATGAATGTGCATTTGGGTATCCAAGTTTGTCTCACTTTCTTGTTTTTTTTATTAACTTTGTGGTGTTGCTCAATTTGTTTTGCAGGTTTAGACCTTTAGGTTTGGTTTTAGTGGGGTTAGGTTTCATGTCCCCCCTCTTTTCTTTGTATTTTTCTTGTTTCGTTTCAAGAAGAATAAGGATTATGTTCCCCCTTCTTTTTCGTGTATTTTTTTTTATTTCTGTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.76

Weight (kDa)

9.41

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024215)

Species Orthologous Gene IDs
malus_domestica MD10G1310000.v1.1
pyrus_communis pycom01g00460 pycom05g09370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 180
AgsI TTSAA 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 102, 134
AluBI AGCT 2 cut(s) 53, 84
AluI AGCT 2 cut(s) 53, 84
Alw26I GTCTC 1 cut(s) 141
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 3
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 135
BpiI GAAGAC 1 cut(s) 3
BseRI GAGGAG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 3
BsuI GTATCC 1 cut(s) 135
BveI ACCTGC 1 cut(s) 180
CviAII CATG 2 cut(s) 32, 232
CviJI RGCY 4 cut(s) 6, 53, 75, 84
CviKI_1 RGCY 4 cut(s) 6, 53, 75, 84
FaeI CATG 2 cut(s) 35, 235
FaiI YATR 5 cut(s) 33, 78, 233, 290, 334
FaqI GGGAC 1 cut(s) 220
FatI CATG 2 cut(s) 31, 231
Hin1II CATG 2 cut(s) 35, 235
HinfI GANTC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 273
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 116, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 35, 235
LpnPI CCDG 1 cut(s) 175
MboII GAAGA 2 cut(s) 3, 288
MluCI AATT 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 51, 251
MseI TTAA 2 cut(s) 23, 159
MwoI GCNNNNNNNGC 1 cut(s) 81
NlaIII CATG 2 cut(s) 35, 235
PfeI GAWTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 23, 159
SetI ASST 6 cut(s) 55, 86, 194, 202, 208, 229
Sse9I AATT 1 cut(s) 178
TaaI ACNGT 1 cut(s) 48
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 23, 159
Tru9I TTAA 2 cut(s) 23, 159
TspDTI ATGAA 2 cut(s) 123, 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.