Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029272

Physical Location & Seq

Genomic Coordinates Forward (+)

15113765 .. 15114265

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g11480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCCACCTCAGCAGCCCCTTCTTCTTCGTCTGGTCGTACTACTCGTTCTTCCAAGCGCGCTCGTCTTTCTGCTTCTACATTGTCTTCTGTTGGCCCCGCTTCGATTACGACCCGGTCCCGCGCTTCTCGGACCCAAAACGAACCCTCACCTGCCGCACCCATGGACCCCACGAACGAATCGTCCGGCTCGCGTGGCCGCCGCAACAAGAGTTCCGATAAGGATGGCTCGGATAAAGGTAAGGAGAAGGAGCATGAGGTTAGGATTAGGGATAGGGAGAGGGAGAGGGAGAGGGAGAGGGAAAGAGAGAGGGATGCTGAGAGGAACCTAGGGTTGAATATGGATGGTGGAGGAACTGGCGATGACGATGACAATGATAGCGAAGGCGGTGTTGGGATTTTGCACCAGAACTTGACTTCAGCGAGTAGTGCCCTTCAGGGGCTTCTTAGGAACGATCGGCGCTGGATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

167

Amino Acids

18.12

Weight (kDa)

10.05

Isoelectric Point (pI)

62.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029272)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g11480
rosa_roxburghii	Rroxscaffold_7G00178620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccII	CGCG	3 cut(s)	87, 150, 220
AciI	CCGC	8 cut(s)	22, 26, 126, 148, 183, 226, 229, 414
AcoI	YGGCCR	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	429, 446
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	22, 465
AgsI	TTSAA	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AoxI	GGCC	3 cut(s)	30, 121, 223
ApeKI	GCWGC	1 cut(s)	41
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspA2I	CCTAGG	1 cut(s)	355
AspLEI	GCGC	4 cut(s)	87, 89, 152, 489
AspS9I	GGNCC	4 cut(s)	122, 144, 159, 193
AsuC2I	CCSGG	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	144, 159, 193
AvrII	CCTAGG	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	2 cut(s)	245, 365
BcnI	CCSGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	42, 183, 226, 229
BlnI	CCTAGG	1 cut(s)	355
BlsI	GCNGC	4 cut(s)	43, 184, 227, 230
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	3 cut(s)	144, 159, 193
BmgT120I	GGNCC	4 cut(s)	122, 144, 159, 193
BmiI	GGNNCC	6 cut(s)	14, 124, 146, 161, 195, 353
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
Bpu10I	CCTNAGC	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	189, 355
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 465
Bse1I	ACTGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	189, 355
BseGI	GGATG	3 cut(s)	256, 346, 376
BseLI	CCNNNNNNNGG	2 cut(s)	22, 465
BseMII	CTCAG	2 cut(s)	51, 336
BseNI	ACTGG	1 cut(s)	388
BsePI	GCGCGC	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	53
Bsh1236I	CGCG	3 cut(s)	87, 150, 220
Bsh1285I	CGRYCG	1 cut(s)	484
BshFI	GGCC	3 cut(s)	32, 123, 225
BsiEI	CGRYCG	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	16, 142, 213
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	22, 465
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	3 cut(s)	32, 123, 225
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	481
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	8 cut(s)	22, 26, 126, 148, 183, 226, 229, 414
BspANI	GGCC	3 cut(s)	32, 123, 225
BspCNI	CTCAG	2 cut(s)	50, 337
BspFNI	CGCG	3 cut(s)	87, 150, 220
BspLI	GGNNCC	6 cut(s)	14, 124, 146, 161, 195, 353
BspMI	ACCTGC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	189, 355
BssHII	GCGCGC	1 cut(s)	85
BssMI	GATC	1 cut(s)	481
BssT1I	CCWWGG	2 cut(s)	189, 355
BstC8I	GCNNGC	3 cut(s)	24, 87, 218
BstDEI	CTNAG	3 cut(s)	37, 345, 473
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	256, 346, 376
BstFNI	CGCG	3 cut(s)	87, 150, 220
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	4 cut(s)	87, 89, 152, 489
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	1 cut(s)	484
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 222, 455
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	3 cut(s)	87, 150, 220
BstV1I	GCAGC	1 cut(s)	53
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	32, 123, 225
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	3 cut(s)	256, 346, 376
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	24, 87, 218
CfoI	GCGC	4 cut(s)	87, 89, 152, 489
Cfr13I	GGNCC	4 cut(s)	122, 144, 159, 193
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	2 cut(s)	190, 281
CviJI	RGCY	8 cut(s)	15, 32, 44, 123, 216, 225, 255, 469
CviKI_1	RGCY	8 cut(s)	15, 32, 44, 123, 216, 225, 255, 469
CviQI	GTAC	1 cut(s)	66
DdeI	CTNAG	3 cut(s)	37, 345, 473
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	41
Eco130I	CCWWGG	2 cut(s)	189, 355
Eco47I	GGWCC	3 cut(s)	144, 159, 193
Eco57I	CTGAAG	2 cut(s)	429, 446
EcoT14I	CCWWGG	2 cut(s)	189, 355
ErhI	CCWWGG	2 cut(s)	189, 355
FaeI	CATG	2 cut(s)	193, 284
FaiI	YATR	3 cut(s)	191, 282, 368
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	2 cut(s)	189, 280
FauI	CCCGC	3 cut(s)	15, 133, 155
Fnu4HI	GCNGC	4 cut(s)	42, 183, 226, 229
FokI	GGATG	3 cut(s)	263, 353, 383
Fsp4HI	GCNGC	4 cut(s)	42, 183, 226, 229
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	4 cut(s)	86, 88, 151, 488
GluI	GCNGC	4 cut(s)	42, 183, 226, 229
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	3 cut(s)	32, 123, 225
HapII	CCGG	3 cut(s)	16, 142, 213
HhaI	GCGC	4 cut(s)	87, 89, 152, 489
Hin1II	CATG	2 cut(s)	193, 284
Hin6I	GCGC	4 cut(s)	85, 87, 150, 487
HinP1I	GCGC	4 cut(s)	85, 87, 150, 487
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	3 cut(s)	16, 142, 213
HphI	GGTGA	1 cut(s)	168
Hpy188I	TCNGA	4 cut(s)	12, 159, 244, 259
HpyAV	CCTTC	4 cut(s)	57, 268, 404, 470
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 222, 455
HpyF3I	CTNAG	3 cut(s)	37, 345, 473
Hsp92II	CATG	2 cut(s)	193, 284
HspAI	GCGC	4 cut(s)	85, 87, 150, 487
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	12, 277
LpnPI	CCDG	9 cut(s)	29, 45, 155, 192, 226, 369, 446, 449, 475
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	356
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	4 cut(s)	42, 45, 69, 105
MhlI	GDGCHC	1 cut(s)	460
MspI	CCGG	3 cut(s)	16, 142, 213
MspR9I	CCNGG	1 cut(s)	142
MvnI	CGCG	3 cut(s)	87, 150, 220
MwoI	GCNNNNNNNGC	3 cut(s)	38, 222, 455
NciI	CCSGG	1 cut(s)	142
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	193, 284
NlaIV	GGNNCC	6 cut(s)	14, 124, 146, 161, 195, 353
PaqCI	CACCTGC	1 cut(s)	187
PauI	GCGCGC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 206
PfeI	GAWTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	43, 184, 227, 230
Ple19I	CGATCG	1 cut(s)	484
PspN4I	GGNNCC	6 cut(s)	14, 124, 146, 161, 195, 353
PspPI	GGNCC	4 cut(s)	122, 144, 159, 193
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
PsyI	GACNNNGTC	1 cut(s)	142
PteI	GCGCGC	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SatI	GCNGC	4 cut(s)	42, 183, 226, 229
Sau3AI	GATC	1 cut(s)	481
Sau96I	GGNCC	4 cut(s)	122, 144, 159, 193
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	5 cut(s)	38, 181, 268, 288, 357
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	3 cut(s)	144, 159, 193
SsiI	CCGC	8 cut(s)	22, 26, 126, 148, 183, 226, 229, 414
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	189, 355
TaqI	TCGA	1 cut(s)	131
TauI	GCSGC	3 cut(s)	185, 228, 231
TfiI	GAWTC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	3 cut(s)	144, 159, 193
XmaJI	CCTAGG	1 cut(s)	355
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.