Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0029272

Physical Location & Seq

Genomic Coordinates Reverse (-)

18271293 .. 18272386

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAAACTCAGAGTCGAAAGCAGGTGGAGGCCACCTCATCAGCCCCTTCTTCATCAACTTCGTCTGGTCGCACCACTCATTCCACCAAGCGCTTTCATCTCTTGTCCTCTTCGCTCTCTTCTTCTGTTAACCCCTTACCAATCTCCACTCGCTCTAGGGCATCTCGGGCCAACAGCCAAGACACCGCCGCCGTGGTTGCCCACCGCCACCATGGACTTGACCAACGAATTGTCCGACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006464 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016020 GO:0016043 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022402 GO:0030154 GO:0032446 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0036211 GO:0042023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044786 GO:0046483 GO:0048468 GO:0048856 GO:0048869 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0090558 GO:0090626 GO:0140096 GO:1901360 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

80

Amino Acids

8.66

Weight (kDa)

11.91

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029272)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g11480
rosa_roxburghii	Rroxscaffold_7G00178620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	13
AciI	CCGC	3 cut(s)	186, 189, 205
AfeI	AGCGCT	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	165
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	2 cut(s)	30, 168
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	13
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BsaJI	CCNNGG	2 cut(s)	192, 211
BseDI	CCNNGG	2 cut(s)	192, 211
BseMII	CTCAG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	32, 170
BsiHKCI	CYCGRG	1 cut(s)	165
BsnI	GGCC	2 cut(s)	32, 170
BsoBI	CYCGRG	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	186, 189, 205
BspANI	GGCC	2 cut(s)	32, 170
BspCNI	CTCAG	1 cut(s)	22
BspMI	ACCTGC	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	192, 211
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	115, 124
BstDEI	CTNAG	1 cut(s)	9
BstDSI	CCRYGG	2 cut(s)	192, 211
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 197
BsuRI	GGCC	2 cut(s)	32, 170
BtgI	CCRYGG	2 cut(s)	192, 211
BveI	ACCTGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	168
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	32, 44, 170, 177
CviKI_1	RGCY	4 cut(s)	32, 44, 170, 177
DdeI	CTNAG	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	115, 124
EarI	CTCTTC	2 cut(s)	115, 124
Eco130I	CCWWGG	1 cut(s)	211
Eco47III	AGCGCT	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	215
FaiI	YATR	1 cut(s)	213
FatI	CATG	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	32, 170
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	12, 236
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 197
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	91
KspAI	GTTAAC	1 cut(s)	130
LpnPI	CCDG	2 cut(s)	8, 51
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	156
MboII	GAAGA	4 cut(s)	42, 102, 111, 114
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	3 cut(s)	22, 46, 118
MseI	TTAA	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	167, 197
NcoI	CCATGG	1 cut(s)	211
NlaIII	CATG	1 cut(s)	215
PaqCI	CACCTGC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	22
SetI	ASST	2 cut(s)	27, 38
SfaNI	GCATC	1 cut(s)	170
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	3 cut(s)	186, 189, 205
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	42, 86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.