Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024457

Physical Location & Seq

Genomic Coordinates Reverse (-)

16934501 .. 16935136

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCCGAGAGCAACATTGAGCGACTTTGGAACGAAGACAAGAATCTTATGAATTTAAAAGTGTTCAATATGCGTTCCTCCAAAAATCTAACTGAAGTTCCAAATCTTTCTCGGAGTAAAAAACTTGGGCATATAAATCTTGATTACTGTACAAGTTTGGTTGAAGTTCCTTCATATTTTCAATATCTTCACGAGCTTACTTCGCTTTTACTTGCTTGGTGCACGAGTCTCAAGTATCTTCCGAAGATGCCAGGCAATATTGAATACTTAGGGTTACGTGGCAGTGGTATAAAGGAATTACCTCCATCAGTTTGGTCTCACCAAAAAATTTCTTCTTTGGATATTGGAGATTGTATAGACCTTAAGAAACTTCCAAACAGCATTTGTAAGCTGAAGGTCTCCGGTTATTTTAGTCTAGACGGCTGCTCATCTCTTGACGAGTTTTCTGAGAGTATTGCCCATATCATCAATGGAGCGTCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

162

Amino Acids

18.15

Weight (kDa)

6.95

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024457)

Species	Orthologous Gene IDs
malus_domestica	MD05G1148200.v1.1
prunus_persica	Prupe.4G248700_v2.0.a1
pyrus_communis	pycom05g13340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	52, 327
AcuI	CTGAAG	2 cut(s)	114, 413
AfaI	GTAC	1 cut(s)	151
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	4 cut(s)	67, 164, 182, 263
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	196, 391
AluI	AGCT	2 cut(s)	196, 391
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	233, 321, 403
Alw44I	GTGCAC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	5
ApaLI	GTGCAC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	52, 327
AsuHPI	GGTGA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	224
BauI	CACGAG	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	3 cut(s)	233, 321, 403
BfaI	CTAG	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	5
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	278
BsaI	GGTCTC	2 cut(s)	321, 403
BsaWI	WCCGGW	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	252
BseMII	CTCAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	402
BsmAI	GTCTC	3 cut(s)	233, 321, 403
Bso31I	GGTCTC	2 cut(s)	321, 403
BsoBI	CYCGRG	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	439
BspTI	CTTAAG	1 cut(s)	362
BspTNI	GGTCTC	2 cut(s)	321, 403
BsrGI	TGTACA	1 cut(s)	149
BssSI	CACGAG	2 cut(s)	191, 223
Bst2BI	CACGAG	2 cut(s)	191, 223
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	268, 447
BstMAI	GTCTC	3 cut(s)	233, 321, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	289
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	1 cut(s)	150
CviJI	RGCY	3 cut(s)	196, 391, 423
CviKI_1	RGCY	3 cut(s)	196, 391, 423
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	268, 447
DraI	TTTAAA	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	321, 403
Eco57I	CTGAAG	2 cut(s)	114, 413
Eco88I	CYCGRG	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	250
FaiI	YATR	8 cut(s)	50, 71, 132, 134, 175, 290, 356, 462
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	1 cut(s)	424
HapII	CCGG	1 cut(s)	402
HgaI	GACGC	1 cut(s)	465
HinfI	GANTC	2 cut(s)	43, 226
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	114, 243, 448
Hpy188III	TCNNGA	4 cut(s)	140, 191, 416, 434
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	180, 388
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	268, 447
HpySE526I	ACGT	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	473
LpnPI	CCDG	3 cut(s)	237, 264, 415
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	273
MboII	GAAGA	5 cut(s)	47, 179, 230, 256, 324
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	3 cut(s)	52, 296, 327
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	88, 312
MseI	TTAA	2 cut(s)	56, 363
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	56, 363
SatI	GCNGC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	6 cut(s)	198, 280, 304, 363, 393, 399
SfaNI	GCATC	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	230, 362
SmoI	CTYRAG	2 cut(s)	230, 362
Sse9I	AATT	3 cut(s)	52, 296, 327
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	280
TasI	AATT	3 cut(s)	52, 296, 327
TatI	WGTACW	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	2 cut(s)	56, 363
Tru9I	TTAA	2 cut(s)	56, 363
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	65, 162
TspRI	CASTG	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	220
XapI	RAATTY	2 cut(s)	52, 327
XbaI	TCTAGA	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	467
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.