Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029278

Physical Location & Seq

Genomic Coordinates Forward (+)

21571958 .. 21573087

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAATTGGCTAAGCGTTTCTCCAAGCGGCTCTTCCACAGCTTGTATTTTACGCAAAGCTGTGTGAAGAGGGAGGAATTTTACCAGCGGTTTGTATACAGCTACGTGAATCGGTTTCAATCGCAGCACTCGAAAGCACAGAAAGGAGGAGAATCGGACACACCGAAAAAGCTGAAAGCTGTTGTTCCTCCGCAAGCTGCTGATGGCATTAGCAGCTATTCGAGTGAGGATGAAGATTTGGTGGATGGTAAGGAGAAAAGGTTGGAGCTTGCTTGGCTGCCCAGAGTTCTCGAGCCAGCTCTTCAATTGTGCAGGTGGGCTCTGCCAACCCCAGCAGGAAATGGAGTGGGAAACAAAACCCCACCGACAACTCGATCAGTCTCGGAGATCATTGCAAACATCCAACGGAGTAAGATAGGAATTGAGGATTGGAGTTTGATCGATCTCACCATTGGTTTGTTTCTTATTTATCTTCGTCAAGCTTCTGTAAATCCGTTTGAGGATGTTAATGGTGTTCAGGTCTCCTCAGATTCAATGGTGCAAGATCGATCATCTACCACTCTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

190

Amino Acids

21.27

Weight (kDa)

8.5

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029278)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18730 pycom10g16180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	303
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	3 cut(s)	28, 88, 191
AcsI	RAATTY	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	119, 305, 534
AjuI	GAANNNNNNNTTGG	4 cut(s)	17, 49, 412, 444
Alw26I	GTCTC	2 cut(s)	385, 526
Ama87I	CYCGRG	1 cut(s)	290
ApeKI	GCWGC	4 cut(s)	124, 197, 213, 277
ApoI	RAATTY	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	136, 184, 225, 264
BccI	CCATC	2 cut(s)	197, 239
BcoDI	GTCTC	2 cut(s)	385, 526
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	5 cut(s)	29, 125, 198, 214, 278
BlpI	GCTNAGC	1 cut(s)	12
BlsI	GCNGC	5 cut(s)	30, 126, 199, 215, 279
BmeT110I	CYCGRG	1 cut(s)	290
Bpu1102I	GCTNAGC	1 cut(s)	12
Bsa29I	ATCGAT	2 cut(s)	441, 547
BsaAI	YACGTR	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse3DI	GCAATG	1 cut(s)	390
BseCI	ATCGAT	2 cut(s)	441, 547
BseGI	GGATG	4 cut(s)	235, 250, 399, 508
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	540, 554
BseRI	GAGGAG	2 cut(s)	162, 514
BseXI	GCAGC	4 cut(s)	136, 184, 225, 264
BseYI	CCCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	331
BshVI	ATCGAT	2 cut(s)	441, 547
BsiHKCI	CYCGRG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	385, 526
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
Bsp1720I	GCTNAGC	1 cut(s)	12
BspACI	CCGC	3 cut(s)	28, 88, 191
BspCNI	CTCAG	2 cut(s)	539, 555
BspDI	ATCGAT	2 cut(s)	441, 547
BspMI	ACCTGC	1 cut(s)	303
BspQI	GCTCTTC	2 cut(s)	38, 306
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	390
BssMI	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst6I	CTCTTC	3 cut(s)	38, 62, 306
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	3 cut(s)	195, 270, 297
BstDEI	CTNAG	3 cut(s)	12, 526, 563
BstF5I	GGATG	4 cut(s)	235, 250, 399, 508
BstKTI	GATC	6 cut(s)	377, 390, 441, 445, 547, 551
BstMAI	GTCTC	2 cut(s)	385, 526
BstMBI	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 274
BstV1I	GCAGC	4 cut(s)	136, 184, 225, 264
BstZ17I	GTATAC	1 cut(s)	97
Bsu15I	ATCGAT	2 cut(s)	441, 547
BsuTUI	ATCGAT	2 cut(s)	441, 547
BtsCI	GGATG	4 cut(s)	235, 250, 399, 508
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	3 cut(s)	195, 270, 297
ClaI	ATCGAT	2 cut(s)	441, 547
DdeI	CTNAG	3 cut(s)	12, 526, 563
DpnI	GATC	6 cut(s)	376, 389, 440, 444, 546, 550
DpnII	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
Eam1104I	CTCTTC	3 cut(s)	38, 62, 306
EarI	CTCTTC	3 cut(s)	38, 62, 306
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	322
FaiI	YATR	1 cut(s)	97
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	29, 125, 198, 214, 278
FokI	GGATG	4 cut(s)	242, 257, 386, 515
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	29, 125, 198, 214, 278
GluI	GCNGC	5 cut(s)	29, 125, 198, 214, 278
GsaI	CCCAGC	1 cut(s)	335
HindIII	AAGCTT	1 cut(s)	480
HinfI	GANTC	3 cut(s)	109, 152, 530
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	157, 385, 529, 564
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	312, 395, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 274
HpyF3I	CTNAG	3 cut(s)	12, 526, 563
HpySE526I	ACGT	1 cut(s)	105
Kzo9I	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
LguI	GCTCTTC	2 cut(s)	38, 306
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	98, 295, 298, 309, 321, 345, 503
Lsp1109I	GCAGC	4 cut(s)	136, 184, 225, 264
MaeII	ACGT	1 cut(s)	105
MalI	GATC	6 cut(s)	376, 389, 440, 444, 546, 550
MboI	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
MboII	GAAGA	5 cut(s)	25, 79, 245, 293, 464
MfeI	CAATTG	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	5, 77, 305, 420
MmeI	TCCRAC	2 cut(s)	243, 427
MnlI	CCTC	8 cut(s)	63, 67, 140, 198, 220, 418, 493, 535
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	213, 274
NdeII	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
PaeR7I	CTCGAG	1 cut(s)	290
PaqCI	CACCTGC	1 cut(s)	303
PciSI	GCTCTTC	2 cut(s)	38, 306
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 161
PfeI	GAWTC	3 cut(s)	109, 152, 530
PkrI	GCNGC	5 cut(s)	30, 126, 199, 215, 279
Ppu21I	YACGTR	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	331
SapI	GCTCTTC	2 cut(s)	38, 306
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	5 cut(s)	29, 125, 198, 214, 278
Sau3AI	GATC	6 cut(s)	374, 387, 438, 442, 544, 548
SduI	GDGCHC	1 cut(s)	322
Sfr274I	CTCGAG	1 cut(s)	290
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	5, 77, 305, 420
SsiI	CCGC	3 cut(s)	28, 88, 191
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	6 cut(s)	131, 221, 291, 373, 441, 547
TasI	AATT	4 cut(s)	5, 77, 305, 420
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	109, 152, 530
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TseI	GCWGC	4 cut(s)	124, 197, 213, 277
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	2 cut(s)	421, 483
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.