Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029278

Physical Location & Seq

Genomic Coordinates Forward (+)

19372684 .. 19373513

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAATTGGCCAAGCATTTCTCCAAGCAGCTCTTCGACAGCTTGCATTTTACGCAAAGCTTTGTGAAGAGGGAGGAATTTTACCGGCGGTTTGTATACAGCTACGTGAATCTGTTTAAATCGCAGCACTCGAAAGCAGAAAAAGGAGGAGAATCGGACGCACCGAAAAAGCCGAAAGCTGTTGGTCCTCAGCAAGCTGCTTTGGGGCCAAAAGCTGCTGGTGGCATTAGCAGCTCTTCGAGTGAGGATGAAGATTTAGTCGATAGCAAGAGGAAAAGGTTGGAGCTTGCTTGGCTCCCCAAAGTTCTCGAGCCAGCTCTTCAATTGTGCAGATGGGCTCTGCCCACCCCTGCAGGAAATGAAGTGGGAAACAAAACCCCACCCACCACTCGATCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

9.52

Isoelectric Point (pI)

62.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029278)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18730 pycom10g16180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	9, 206
ApeKI	GCWGC	5 cut(s)	28, 124, 197, 215, 231
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	185, 206
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	340
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BccI	CCATC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	400
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
BlsI	GCNGC	5 cut(s)	30, 126, 199, 217, 233
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	185, 206
BmiI	GGNNCC	2 cut(s)	207, 296
Bpu10I	CCTNAGC	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	84
BseGI	GGATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BsgI	GTGCAG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	11, 208
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	85
BsnI	GGCC	2 cut(s)	11, 208
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	11, 208
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	207, 296
BspMAI	CTGCAG	1 cut(s)	355
BspQI	GCTCTTC	3 cut(s)	38, 241, 324
BsrFI	RCCGGY	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	84
BssMI	GATC	1 cut(s)	392
BssNAI	GTATAC	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	97
Bst6I	CTCTTC	4 cut(s)	38, 62, 241, 324
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	44, 195, 288, 315
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	5 cut(s)	40, 136, 184, 202, 243
BstZ17I	GTATAC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	11, 208
BtsCI	GGATG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	44, 195, 288, 315
Cfr10I	RCCGGY	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	185, 206
CseI	GACGC	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	4 cut(s)	38, 62, 241, 324
EarI	CTCTTC	4 cut(s)	38, 62, 241, 324
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	340
FaiI	YATR	1 cut(s)	97
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
HaeIII	GGCC	2 cut(s)	11, 208
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	167
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	2 cut(s)	109, 152
HpaII	CCGG	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	46, 330, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	392
LguI	GCTCTTC	3 cut(s)	38, 241, 324
LmnI	GCTCC	2 cut(s)	283, 300
LpnPI	CCDG	5 cut(s)	98, 204, 327, 339, 363
Lsp1109I	GCAGC	5 cut(s)	40, 136, 184, 202, 243
MaeI	CTAG	1 cut(s)	400
MaeII	ACGT	1 cut(s)	105
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	5 cut(s)	25, 79, 228, 263, 311
MfeI	CAATTG	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	340
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	5, 77, 323
MluNI	TGGCCA	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	63, 67, 140, 198, 238, 264
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	117
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	52, 231, 292
NdeII	GATC	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	207, 296
PaeR7I	CTCGAG	1 cut(s)	308
PciSI	GCTCTTC	3 cut(s)	38, 241, 324
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 161
PfeI	GAWTC	2 cut(s)	109, 152
PkrI	GCNGC	5 cut(s)	30, 126, 199, 217, 233
Ppu21I	YACGTR	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	207, 296
PspPI	GGNCC	2 cut(s)	185, 206
PstI	CTGCAG	1 cut(s)	355
SapI	GCTCTTC	3 cut(s)	38, 241, 324
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	5 cut(s)	29, 125, 198, 216, 232
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	185, 206
SbfI	CCTGCAGG	1 cut(s)	355
SdaI	CCTGCAGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse8387I	CCTGCAGG	1 cut(s)	355
Sse9I	AATT	3 cut(s)	5, 77, 323
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	400
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	6 cut(s)	36, 131, 239, 261, 309, 391
TasI	AATT	3 cut(s)	5, 77, 323
TfiI	GAWTC	2 cut(s)	109, 152
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	5 cut(s)	28, 124, 197, 215, 231
TspDTI	ATGAA	2 cut(s)	264, 375
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.