pycom05g19060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0029279
Physical Location & Seq
Reverse (-)
21974291 .. 21975004
714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19060.1

Sequence Viewer

Length: 714 bp
ATGGAGAGTCACCCAAAATACTTTCACCAGAAAAGCCTAAACCACATCGGCGGCCGCTCAGAACAGCGGCGCCGGCAGATTCAGATCGAACAAGAACGGCTTCTTCTTCTTCCGCATCTTCTTCTCCTCCTCGCCCACCACCACGTCCACATTCTCAAGCATGTACCCTGTATACTCCGACCTAACCGGCCCCACCGCTGGAGCTCCAGTCATAACGTACATCAGCGGTGGAGGCCAGAGCATCTCAGAGCCGCCGCCGAGGAGAAGCGAGTGAGGCGGAGCAAGAGCGAGATTACCGAAGTTGGTCTTCGCCTTGGAACCGCGGAGGCTAAGCGCGGCCTCGTCGTACGCACGCGCCGCCTCCTCGGCGGTGTCGTAGGTGCCGAGCCACTTCCGAGTCTTCTTCCACGGATCGCGAATCTCGGCGGCGAACCGTCCCCACGGCCGCTTCCGCACGCCTCTAAAATGCGGATCCCTTCCCCCGCCGCCTTTACCGGGCGAAGCGTGCCTGGGCTGAGCTCGAAGCTTGCGAGGCGGAGGCGGAGGCGAAGGCGGTTCGACGGCGAGGGAGAGTGCGGTGTCGCGGAGGTGGAGCGCGTCTACAGTAGACATTGGGTGGACCGTGCGGAGAGAGAAAATGGGGGCGAAGACTCGAGTGAGTTTAGGGTTGGCGTTTTGGAGGGTATTTATAGGGGAGGAGACAGTCTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

27.02

Weight (kDa)

11.33

Isoelectric Point (pI)

90.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029279)

Species Orthologous Gene IDs
pyrus_communis pycom05g19060
rosa_samantha Rh5AG225900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 69, 380
AccBSI CCGCTC 1 cut(s) 57
AccI GTMKAC 3 cut(s) 172, 600, 607
AccII CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
AclWI GGATC 3 cut(s) 419, 466, 479
AcoI YGGCCR 2 cut(s) 52, 443
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 3 cut(s) 165, 219, 348
AfiI CCNNNNNNNGG 2 cut(s) 198, 495
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 3 cut(s) 204, 519, 526
AluI AGCT 3 cut(s) 204, 519, 526
Alw21I GWGCWC 2 cut(s) 206, 521
Alw26I GTCTC 1 cut(s) 693
AlwI GGATC 3 cut(s) 419, 466, 479
Ama87I CYCGRG 1 cut(s) 652
AoxI GGCC 5 cut(s) 52, 188, 233, 337, 443
Asp700I GAANNNNTTC 1 cut(s) 99
AspLEI GCGC 4 cut(s) 72, 336, 357, 597
AspS9I GGNCC 2 cut(s) 189, 619
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 652
AvaII GGWCC 1 cut(s) 619
BamHI GGATCC 1 cut(s) 471
BanI GGYRCC 2 cut(s) 69, 380
BanII GRGCYC 2 cut(s) 206, 521
BbsI GAAGAC 3 cut(s) 299, 392, 654
Bbv12I GWGCWC 2 cut(s) 206, 521
BceAI ACGGC 3 cut(s) 113, 458, 577
BciT130I CCWGG 1 cut(s) 510
BcnI CCSGG 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 693
BfmI CTRYAG 1 cut(s) 601
BfoI RGCGCY 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 366
BlpI GCTNAGC 2 cut(s) 330, 515
Bme1390I CCNGG 2 cut(s) 496, 510
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 189, 619
BmiI GGNNCC 5 cut(s) 71, 191, 319, 382, 473
BmrFI CCNGG 2 cut(s) 496, 510
BmsI GCATC 2 cut(s) 124, 250
BpiI GAAGAC 3 cut(s) 299, 392, 654
BpmI CTGGAG 2 cut(s) 190, 220
Bpu1102I GCTNAGC 2 cut(s) 330, 515
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 83
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 7 cut(s) 258, 313, 321, 364, 407, 440, 509
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 495
Bse118I RCCGGY 2 cut(s) 72, 186
Bse1I ACTGG 1 cut(s) 207
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 7 cut(s) 258, 313, 321, 364, 407, 440, 509
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 198, 495
BseMII CTCAG 3 cut(s) 72, 259, 506
BseNI ACTGG 1 cut(s) 207
BseRI GAGGAG 5 cut(s) 116, 119, 275, 353, 711
BseX3I CGGCCG 2 cut(s) 52, 443
Bsh1236I CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
Bsh1285I CGRYCG 2 cut(s) 55, 446
BshFI GGCC 5 cut(s) 54, 190, 235, 339, 445
BshNI GGYRCC 2 cut(s) 69, 380
BsiEI CGRYCG 2 cut(s) 55, 446
BsiHKAI GWGCWC 2 cut(s) 206, 521
BsiHKCI CYCGRG 1 cut(s) 652
BsiSI CCGG 3 cut(s) 73, 187, 495
BsiWI CGTACG 1 cut(s) 346
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 2 cut(s) 198, 495
BsmAI GTCTC 1 cut(s) 693
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 5 cut(s) 54, 190, 235, 339, 445
BsoBI CYCGRG 1 cut(s) 652
Bsp1286I GDGCHC 2 cut(s) 206, 521
Bsp143I GATC 3 cut(s) 84, 411, 471
Bsp1720I GCTNAGC 2 cut(s) 330, 515
Bsp68I TCGCGA 1 cut(s) 416
BspANI GGCC 5 cut(s) 54, 190, 235, 339, 445
BspCNI CTCAG 3 cut(s) 71, 258, 507
BspFNI CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
BspLI GGNNCC 5 cut(s) 71, 191, 319, 382, 473
BspPI GGATC 3 cut(s) 419, 466, 479
BspT107I GGYRCC 2 cut(s) 69, 380
BsrBI CCGCTC 1 cut(s) 57
BsrFI RCCGGY 2 cut(s) 72, 186
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 2 cut(s) 72, 186
BssECI CCNNGG 7 cut(s) 258, 313, 321, 364, 407, 440, 509
BssMI GATC 3 cut(s) 84, 411, 471
BssNAI GTATAC 1 cut(s) 173
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 4 cut(s) 435, 605, 623, 704
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 5 cut(s) 74, 353, 456, 506, 528
BstDEI CTNAG 4 cut(s) 58, 245, 330, 515
BstDSI CCRYGG 3 cut(s) 321, 407, 440
BstFNI CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 4 cut(s) 72, 336, 357, 597
BstKTI GATC 3 cut(s) 87, 414, 474
BstMAI GTCTC 1 cut(s) 693
BstMBI GATC 3 cut(s) 84, 411, 471
BstMCI CGRYCG 2 cut(s) 55, 446
BstMWI GCNNNNNNNGC 8 cut(s) 73, 232, 274, 357, 366, 451, 505, 532
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 494, 508
BstSFI CTRYAG 1 cut(s) 601
BstUI CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
BstV2I GAAGAC 3 cut(s) 299, 392, 654
BstX2I RGATCY 1 cut(s) 471
BstYI RGATCY 1 cut(s) 471
BstZ17I GTATAC 1 cut(s) 173
BstZI CGGCCG 2 cut(s) 52, 443
BsuRI GGCC 5 cut(s) 54, 190, 235, 339, 445
BtgI CCRYGG 3 cut(s) 321, 407, 440
BtrI CACGTC 1 cut(s) 145
BtuMI TCGCGA 1 cut(s) 416
Cac8I GCNNGC 5 cut(s) 74, 353, 456, 506, 528
CciNI GCGGCCGC 1 cut(s) 52
CfoI GCGC 4 cut(s) 72, 336, 357, 597
Cfr10I RCCGGY 2 cut(s) 72, 186
Cfr13I GGNCC 2 cut(s) 189, 619
Cfr42I CCGCGG 1 cut(s) 324
CseI GACGC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 164, 218, 347
CviAII CATG 1 cut(s) 161
CviQI GTAC 3 cut(s) 164, 218, 347
DdeI CTNAG 4 cut(s) 58, 245, 330, 515
DinI GGCGCC 1 cut(s) 71
DpnI GATC 3 cut(s) 86, 413, 473
DpnII GATC 3 cut(s) 84, 411, 471
EaeI YGGCCR 2 cut(s) 52, 443
EagI CGGCCG 2 cut(s) 52, 443
EciI GGCGGA 3 cut(s) 292, 550, 556
Ecl136II GAGCTC 2 cut(s) 204, 519
EclXI CGGCCG 2 cut(s) 52, 443
Eco130I CCWWGG 1 cut(s) 313
Eco24I GRGCYC 2 cut(s) 206, 521
Eco47I GGWCC 1 cut(s) 619
Eco52I CGGCCG 2 cut(s) 52, 443
Eco53kI GAGCTC 2 cut(s) 204, 519
Eco88I CYCGRG 1 cut(s) 652
EcoICRI GAGCTC 2 cut(s) 204, 519
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 313
EcoT38I GRGCYC 2 cut(s) 206, 521
EgeI GGCGCC 1 cut(s) 71
EheI GGCGCC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 162, 173, 213, 690
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 291, 323
FaqI GGGAC 1 cut(s) 421
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 490
FblI GTMKAC 3 cut(s) 172, 600, 607
FriOI GRGCYC 2 cut(s) 206, 521
GlaI GCGC 4 cut(s) 71, 335, 356, 596
GsuI CTGGAG 2 cut(s) 190, 220
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 5 cut(s) 54, 190, 235, 339, 445
HapII CCGG 3 cut(s) 73, 187, 495
HgaI GACGC 1 cut(s) 586
HhaI GCGC 4 cut(s) 72, 336, 357, 597
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 4 cut(s) 70, 334, 355, 595
HinP1I GCGC 4 cut(s) 70, 334, 355, 595
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 5 cut(s) 7, 79, 397, 418, 650
HpaII CCGG 3 cut(s) 73, 187, 495
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 5 cut(s) 148, 173, 601, 608, 619
Hpy188I TCNGA 5 cut(s) 61, 84, 179, 248, 396
Hpy188III TCNNGA 1 cut(s) 415
Hpy8I GTNNAC 5 cut(s) 148, 173, 601, 608, 619
Hpy99I CGWCG 2 cut(s) 347, 563
HpyAV CCTTC 2 cut(s) 486, 543
HpyCH4III ACNGT 4 cut(s) 435, 605, 623, 704
HpyCH4IV ACGT 2 cut(s) 144, 216
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 232, 274, 357, 366, 451, 505, 532
HpyF3I CTNAG 4 cut(s) 58, 245, 330, 515
HpySE526I ACGT 2 cut(s) 144, 216
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 4 cut(s) 70, 334, 355, 595
KasI GGCGCC 1 cut(s) 69
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
KspI CCGCGG 1 cut(s) 324
Kzo9I GATC 3 cut(s) 84, 411, 471
LmnI GCTCC 4 cut(s) 201, 209, 279, 592
LweI GCATC 2 cut(s) 124, 250
MaeII ACGT 2 cut(s) 144, 216
MaeIII GTNAC 1 cut(s) 8
MalI GATC 3 cut(s) 86, 413, 473
MbiI CCGCTC 1 cut(s) 57
MboI GATC 3 cut(s) 84, 411, 471
MboII GAAGA 9 cut(s) 95, 98, 101, 110, 113, 299, 392, 395, 659
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 2 cut(s) 206, 521
Mly113I GGCGCC 1 cut(s) 70
MlyI GAGTC 3 cut(s) 16, 406, 644
MmeI TCCRAC 1 cut(s) 202
MroNI GCCGGC 1 cut(s) 72
MroXI GAANNNNTTC 1 cut(s) 99
MseI TTAA 1 cut(s) 712
MspA1I CMGCKG 4 cut(s) 67, 198, 226, 323
MspI CCGG 3 cut(s) 73, 187, 495
MspR9I CCNGG 2 cut(s) 496, 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 6 cut(s) 323, 336, 355, 416, 584, 597
MwoI GCNNNNNNNGC 8 cut(s) 73, 232, 274, 357, 366, 451, 505, 532
NaeI GCCGGC 1 cut(s) 74
NarI GGCGCC 1 cut(s) 70
NciI CCSGG 1 cut(s) 496
NdeII GATC 3 cut(s) 84, 411, 471
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 5 cut(s) 71, 191, 319, 382, 473
NmeAIII GCCGAG 4 cut(s) 283, 345, 402, 409
NmuCI GTSAC 1 cut(s) 8
NotI GCGGCCGC 1 cut(s) 52
NruI TCGCGA 1 cut(s) 416
NspI RCATGY 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 652
PcsI WCGNNNNNNNCGW 3 cut(s) 372, 381, 527
PdiI GCCGGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 79, 418
Pfl23II CGTACG 1 cut(s) 346
PleI GAGTC 3 cut(s) 15, 405, 644
PluTI GGCGCC 1 cut(s) 73
PpsI GAGTC 3 cut(s) 15, 405, 644
Psp124BI GAGCTC 2 cut(s) 206, 521
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspLI CGTACG 1 cut(s) 346
PspN4I GGNNCC 5 cut(s) 71, 191, 319, 382, 473
PspPI GGNCC 2 cut(s) 189, 619
PspXI VCTCGAGB 1 cut(s) 652
PsuI RGATCY 1 cut(s) 471
RruI TCGCGA 1 cut(s) 416
RsaI GTAC 3 cut(s) 165, 219, 348
RsaNI GTAC 3 cut(s) 164, 218, 347
SacI GAGCTC 2 cut(s) 206, 521
SacII CCGCGG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 712
Sau3AI GATC 3 cut(s) 84, 411, 471
Sau96I GGNCC 2 cut(s) 189, 619
SchI GAGTC 3 cut(s) 16, 406, 644
ScrFI CCNGG 2 cut(s) 496, 510
SduI GDGCHC 2 cut(s) 206, 521
SetI ASST 8 cut(s) 147, 184, 206, 219, 382, 521, 528, 591
SfaNI GCATC 2 cut(s) 124, 250
SfcI CTRYAG 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 652
Sfr303I CCGCGG 1 cut(s) 324
SgrBI CCGCGG 1 cut(s) 324
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 652
SmlI CTYRAG 2 cut(s) 155, 652
SmoI CTYRAG 2 cut(s) 155, 652
SspDI GGCGCC 1 cut(s) 69
SstI GAGCTC 2 cut(s) 206, 521
StyD4I CCNGG 2 cut(s) 494, 508
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 4 cut(s) 435, 605, 623, 704
TaiI ACGT 2 cut(s) 147, 219
TaqI TCGA 4 cut(s) 87, 521, 558, 653
TfiI GAWTC 2 cut(s) 79, 418
Tru1I TTAA 1 cut(s) 712
Tru9I TTAA 1 cut(s) 712
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 619
XceI RCATGY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 652
XmiI GTMKAC 3 cut(s) 172, 600, 607
XmnI GAANNNNTTC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.