pycom05g19910

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0029281
Physical Location & Seq
Forward (+)
22852579 .. 22853324
746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19910.3

Sequence Viewer

Length: 576 bp
ATGAATTCATGCCCAGCAAAAGCTTGGACTTTTATATTTTTGCAGGAGGGACAAAAACTGCTCGACTGGCCTAAGTGCTTCCACTTTATCGTTGGAGTTGCCCGAGGACTTCTTTATCTTCACCAAGACTCTAGATTAAGGATTATACATCGAGATCTGAAACCTAGCAATATTTTGCTAGATGATAATATGAACCCGAAGATTTCAGACTTCGGCCTAGCTAAAACATTGAGCGGTGATCAAAGTCAGGCCAACACAAATAGAGTGGTTGGAACCTATGTTTATATGTCTCCGGAATATGCAGCAGATGGATTTTTCTCGATGAAATCTGATGTTTTTAGCTTTGGAGTCACACTGCTTGAGATGTTGAGTAGGAAGAAGAACACGGGATTTCATCATCCAGATCACGACCACAACCTTCTTGGACATGTAAGTTTAACCAACGAGGTGATGATATTTTACATTAAAAAGAATAGTGAATTAGACGGTGCTCTTCGAAGCACGTCTTGTAATGACATGCCATTTAACAGTGTTGAAGGTCTGCAGCAAAGCCCCTTTTACATATTAGGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

192

Amino Acids

21.66

Weight (kDa)

6.74

Isoelectric Point (pI)

51.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029281)

Species Orthologous Gene IDs
pyrus_communis pycom05g19910
rosa_multiflora Rmu_sc0024666.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 4
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 1 cut(s) 536
AjiI CACGTC 1 cut(s) 504
AluBI AGCT 3 cut(s) 23, 221, 342
AluI AGCT 3 cut(s) 23, 221, 342
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 294
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 4 cut(s) 68, 214, 249, 568
ApeKI GCWGC 2 cut(s) 302, 544
ApoI RAATTY 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 113, 248, 460
AsuII TTCGAA 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 314, 556
BccI CCATC 1 cut(s) 302
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 4 cut(s) 132, 165, 179, 218
BfmI CTRYAG 1 cut(s) 542
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 303, 545
BlsI GCNGC 2 cut(s) 304, 546
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 314, 556
BseYI CCCAGC 1 cut(s) 13
BshFI GGCC 4 cut(s) 70, 216, 251, 570
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 294
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 4 cut(s) 70, 216, 251, 570
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 493
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 3 cut(s) 154, 238, 403
BspACI CCGC 1 cut(s) 234
BspANI GGCC 4 cut(s) 70, 216, 251, 570
BspEI TCCGGA 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 546
BspQI GCTCTTC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 496
BsrBI CCGCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 3 cut(s) 154, 238, 403
Bst4CI ACNGT 2 cut(s) 488, 530
Bst6I CTCTTC 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 496
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 397
BstKTI GATC 3 cut(s) 157, 241, 406
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 3 cut(s) 154, 238, 403
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstNSI RCATGY 2 cut(s) 431, 520
BstSFI CTRYAG 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 314, 556
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 4 cut(s) 70, 216, 251, 570
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 1 cut(s) 397
BtsI GCAGTG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 353, 535
CspCI CAANNNNNGTGG 2 cut(s) 246, 281
CviAII CATG 3 cut(s) 9, 428, 517
CviJI RGCY 8 cut(s) 23, 70, 216, 221, 251, 342, 552, 570
CviKI_1 RGCY 8 cut(s) 23, 70, 216, 221, 251, 342, 552, 570
DdeI CTNAG 1 cut(s) 72
DpnI GATC 3 cut(s) 156, 240, 405
DpnII GATC 3 cut(s) 154, 238, 403
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 3 cut(s) 12, 431, 520
FalI AAGNNNNNCTT 2 cut(s) 490, 522
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 8, 427, 516
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 303, 545
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 2 cut(s) 303, 545
FspBI CTAG 4 cut(s) 132, 165, 179, 218
GluI GCNGC 2 cut(s) 303, 545
GsaI CCCAGC 1 cut(s) 17
HaeIII GGCC 4 cut(s) 70, 216, 251, 570
HapII CCGG 1 cut(s) 293
Hin1II CATG 3 cut(s) 12, 431, 520
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 128, 348
HpaII CCGG 1 cut(s) 293
HphI GGTGA 3 cut(s) 113, 248, 460
Hpy188I TCNGA 3 cut(s) 159, 208, 331
Hpy188III TCNNGA 6 cut(s) 132, 152, 293, 319, 401, 407
HpyAV CCTTC 2 cut(s) 428, 530
HpyCH4III ACNGT 2 cut(s) 488, 530
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 43, 302, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 72
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 3 cut(s) 12, 431, 520
Kpn2I TCCGGA 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 154, 238, 403
LguI GCTCTTC 1 cut(s) 498
LpnPI CCDG 6 cut(s) 27, 29, 52, 233, 306, 414
Lsp1109I GCAGC 2 cut(s) 314, 556
MaeI CTAG 4 cut(s) 132, 165, 179, 218
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 349
MalI GATC 3 cut(s) 156, 240, 405
MbiI CCGCTC 1 cut(s) 234
MboI GATC 3 cut(s) 154, 238, 403
MboII GAAGA 5 cut(s) 110, 211, 388, 391, 485
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 4, 479
MlyI GAGTC 2 cut(s) 122, 357
MmeI TCCRAC 2 cut(s) 73, 250
MnlI CCTC 3 cut(s) 40, 98, 439
MroI TCCGGA 1 cut(s) 292
MseI TTAA 4 cut(s) 137, 437, 465, 525
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 67
NdeII GATC 3 cut(s) 154, 238, 403
NlaIII CATG 3 cut(s) 12, 431, 520
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 349
NspI RCATGY 2 cut(s) 431, 520
NspV TTCGAA 1 cut(s) 496
PciI ACATGT 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 498
PkrI GCNGC 2 cut(s) 304, 546
PleI GAGTC 2 cut(s) 122, 356
PpsI GAGTC 2 cut(s) 122, 356
PscI ACATGT 1 cut(s) 427
PspFI CCCAGC 1 cut(s) 13
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 137, 437, 465, 525
SatI GCNGC 2 cut(s) 303, 545
Sau3AI GATC 3 cut(s) 154, 238, 403
SchI GAGTC 2 cut(s) 122, 357
SduI GDGCHC 1 cut(s) 493
SetI ASST 9 cut(s) 25, 166, 223, 278, 344, 420, 450, 506, 541
SfcI CTRYAG 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 4, 479
SsiI CCGC 1 cut(s) 234
SspI AATATT 1 cut(s) 172
SspMI CTAG 4 cut(s) 132, 165, 179, 218
TaaI ACNGT 2 cut(s) 488, 530
TaiI ACGT 1 cut(s) 506
TaqI TCGA 4 cut(s) 63, 151, 320, 496
TasI AATT 2 cut(s) 4, 479
Tru1I TTAA 4 cut(s) 137, 437, 465, 525
Tru9I TTAA 4 cut(s) 137, 437, 465, 525
TscAI CASTG 2 cut(s) 360, 535
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 302, 544
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 4 cut(s) 17, 206, 338, 383
TspRI CASTG 2 cut(s) 360, 535
XapI RAATTY 1 cut(s) 4
XbaI TCTAGA 1 cut(s) 131
XceI RCATGY 2 cut(s) 431, 520
XcmI CCANNNNNNNNNTGG 3 cut(s) 21, 89, 419
XspI CTAG 4 cut(s) 132, 165, 179, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.