Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024642

Physical Location & Seq

Genomic Coordinates Forward (+)

24665285 .. 24666811

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTGTTTGTAGATGTTGGTCACAACAATCTCTCTAGTAATATTCATTGGGGGATATTAAGTTCATTGCAAGTATTAAAGCTAACAACAACAATTTTGGTAGTGAGATTCCTGCTTCCTCGCAAAATTGTTCTAGTTTTACGGTCCAACTATTTTAGTAGACGTATTTCCCAGCAACTGTGCAATCTTTGGAGCCTTTATATCTTCGACCTTAGTCACAACAGCCTTTCACGTACTATTCCCATATGTTTAAGTAATTTGACTTCGTTTGTCAATGATTCAAATACATACTCTACTGATTATCTTGAGCAAGCCACACTGACACCAAACGAGAAGAACTTGTCAAAGTATTTACAAGGTAAAATCCCTGAAGAAATAAGTAGCCTGATTCTATTGGCATTTGAATTTGTGTATGAATCAATTGACTGGAAATATCCCTTCCAAGGTCAGAAACTTGCGTTGATTGCTCAAAGCTTGTCATTTAAAATCTCTTTGTCCCACTTGAACCTATTTTACAACAACTTGTCCGGAAGAAATTATCCTGGAAATCATGGTGTTCCCTTCTTAACTAAGTGCCATGGAGATGACACCTTCGTAGCTAAGGATGCAAAAGACAATAATGAAGATGGAAATGATGATAAGTTGTGGTTTCAGGTCATTTTTTGTGTAGATACTATCTTATTTAAAACAAAAAATATACAAGAGGACGAATTACCCATTTTCCATCGTAGCAATCCTACTTTTCTCTCTCAACTCTTGCACCCTACCTCTCACCACATTACCACCGTTCATCAACCCCTTTATGCTTCTATCCACCTCCTCTCCCATCACCAAATCACTACCCTCTCTATAATCCAACCTAATCTCAATTGCCAATCCCATTTCCTTCGACATCTCAAAGGCATTCATTTGTTGCTCCGCGTAAATCGGCCACGTGGCAATCGATACACCGTACCACAAGCTCTCCAAAATCGAGTTCCAACCACAATGCGATATGAACCCTTCGATCGATTGGTGGGACAAGATCTTCGCTTGTGGGATCCACCCGCACACCATGCCCAATTCACTCGTCCGCTCCAAGAACCCATTGGGCAACACATCTTCCACGTTCGCGTGGTTGCTTGGGAGATCCAATTGGGACTTGGGCGGCTCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

386

Amino Acids

44.47

Weight (kDa)

9.01

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024642)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g22230 pycom05g22260 pycom09g06210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1075
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	2 cut(s)	921, 1113
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	4 cut(s)	919, 1047, 1073, 1147
AclWI	GGATC	3 cut(s)	1034, 1047, 1123
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	390
AcvI	CACGTG	1 cut(s)	935
AfaI	GTAC	2 cut(s)	235, 954
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	282, 404, 505
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	960, 992
AloI	GAACNNNNNNTCC	2 cut(s)	46, 78
AluBI	AGCT	4 cut(s)	82, 474, 599, 962
AluI	AGCT	4 cut(s)	82, 474, 599, 962
AlwI	GGATC	3 cut(s)	1034, 1047, 1123
AlwNI	CAGNNNCTG	1 cut(s)	178
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	1 cut(s)	929
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	1011, 1043
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	764, 821
AvaII	GGWCC	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	1039
BarI	GAAGNNNNNNTAC	2 cut(s)	247, 279
BbrPI	CACGTG	1 cut(s)	935
BccI	CCATC	3 cut(s)	620, 732, 834
BciT130I	CCWGG	1 cut(s)	543
BfaI	CTAG	2 cut(s)	36, 134
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	1 cut(s)	1148
BlsI	GCNGC	1 cut(s)	1149
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	194, 1041
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	595
BoxI	GACNNNNGTC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	326
Bsa29I	ATCGAT	2 cut(s)	943, 1009
BsaAI	YACGTR	2 cut(s)	233, 935
BsaJI	CCNNGG	2 cut(s)	442, 577
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	4 cut(s)	806, 836, 948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	65
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	543
BseCI	ATCGAT	2 cut(s)	943, 1009
BseDI	CCNNGG	2 cut(s)	442, 577
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	1 cut(s)	809
BseYI	CCCAGC	1 cut(s)	171
Bsh1236I	CGCG	2 cut(s)	921, 1113
Bsh1285I	CGRYCG	1 cut(s)	1009
BshFI	GGCC	1 cut(s)	931
BshVI	ATCGAT	2 cut(s)	943, 1009
BsiEI	CGRYCG	1 cut(s)	1009
BsiSI	CCGG	1 cut(s)	528
BslFI	GGGAC	3 cut(s)	481, 1032, 1152
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	3 cut(s)	481, 1032, 1152
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	1 cut(s)	931
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	1006, 1024, 1039, 1128
Bsp19I	CCATGG	1 cut(s)	577
BspACI	CCGC	4 cut(s)	919, 1047, 1073, 1147
BspANI	GGCC	1 cut(s)	931
BspDI	ATCGAT	2 cut(s)	943, 1009
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	2 cut(s)	921, 1113
BspLI	GGNNCC	2 cut(s)	194, 1041
BspPI	GGATC	3 cut(s)	1034, 1047, 1123
BsrBI	CCGCTC	1 cut(s)	1075
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	442, 577
BssMI	GATC	4 cut(s)	1006, 1024, 1039, 1128
BssT1I	CCWWGG	2 cut(s)	442, 577
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	4 cut(s)	144, 180, 787, 952
BstAPI	GCANNNNNTGC	1 cut(s)	1055
BstBAI	YACGTR	2 cut(s)	233, 935
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	3 cut(s)	212, 570, 600
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	921, 1113
BstKTI	GATC	4 cut(s)	1009, 1027, 1042, 1131
BstMBI	GATC	4 cut(s)	1006, 1024, 1039, 1128
BstMCI	CGRYCG	1 cut(s)	1009
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 605, 1055
BstNI	CCWGG	1 cut(s)	543
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	2 cut(s)	921, 1113
BstX2I	RGATCY	3 cut(s)	1024, 1039, 1128
BstYI	RGATCY	3 cut(s)	1024, 1039, 1128
Bsu15I	ATCGAT	2 cut(s)	943, 1009
BsuRI	GGCC	1 cut(s)	931
BsuTUI	ATCGAT	2 cut(s)	943, 1009
BtgI	CCRYGG	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	2 cut(s)	943, 1009
Csp6I	GTAC	2 cut(s)	234, 953
CviAII	CATG	3 cut(s)	551, 578, 1055
CviQI	GTAC	2 cut(s)	234, 953
DdeI	CTNAG	3 cut(s)	212, 570, 600
DpnI	GATC	4 cut(s)	1008, 1026, 1041, 1130
DpnII	GATC	4 cut(s)	1006, 1024, 1039, 1128
DraI	TTTAAA	2 cut(s)	484, 685
EaeI	YGGCCR	1 cut(s)	929
Eco130I	CCWWGG	2 cut(s)	442, 577
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	390
Eco72I	CACGTG	1 cut(s)	935
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	442, 577
ErhI	CCWWGG	2 cut(s)	442, 577
FaeI	CATG	3 cut(s)	554, 581, 1058
FaqI	GGGAC	3 cut(s)	481, 1032, 1152
FatI	CATG	3 cut(s)	550, 577, 1054
FauI	CCCGC	1 cut(s)	1054
FauNDI	CATATG	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	1148
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	1 cut(s)	1148
FspBI	CTAG	2 cut(s)	36, 134
GluI	GCNGC	1 cut(s)	1148
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	1 cut(s)	528
Hin1II	CATG	3 cut(s)	554, 581, 1058
HindIII	AAGCTT	1 cut(s)	472
HinfI	GANTC	4 cut(s)	108, 278, 388, 416
HpaII	CCGG	1 cut(s)	528
HphI	GGTGA	2 cut(s)	764, 821
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	305, 528
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	448, 571, 601, 896, 1012
HpyCH4III	ACNGT	4 cut(s)	144, 180, 787, 952
HpyCH4IV	ACGT	4 cut(s)	163, 232, 934, 1107
HpyCH4V	TGCA	4 cut(s)	70, 183, 608, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 605, 1055
HpyF3I	CTNAG	3 cut(s)	212, 570, 600
HpySE526I	ACGT	4 cut(s)	163, 232, 934, 1107
Hsp92II	CATG	3 cut(s)	554, 581, 1058
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	4 cut(s)	1006, 1024, 1039, 1128
LmnI	GCTCC	3 cut(s)	192, 921, 1080
LpnPI	CCDG	9 cut(s)	125, 185, 381, 398, 412, 528, 541, 555, 638
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	2 cut(s)	36, 134
MaeII	ACGT	4 cut(s)	163, 232, 934, 1107
MaeIII	GTNAC	2 cut(s)	20, 215
MalI	GATC	4 cut(s)	1008, 1026, 1041, 1130
MbiI	CCGCTC	1 cut(s)	1075
MboI	GATC	4 cut(s)	1006, 1024, 1039, 1128
MboII	GAAGA	7 cut(s)	196, 346, 383, 543, 635, 1019, 1093
MfeI	CAATTG	3 cut(s)	420, 868, 1133
MflI	RGATCY	3 cut(s)	1024, 1039, 1128
MmeI	TCCRAC	3 cut(s)	171, 880, 1004
MnlI	CCTC	6 cut(s)	129, 697, 778, 827, 830, 854
MroI	TCCGGA	1 cut(s)	527
MseI	TTAA	6 cut(s)	59, 77, 251, 483, 566, 684
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	528
MspR9I	CCNGG	1 cut(s)	543
MunI	CAATTG	3 cut(s)	420, 868, 1133
Mva1269I	GAATGC	1 cut(s)	903
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	2 cut(s)	921, 1113
MwoI	GCNNNNNNNGC	3 cut(s)	464, 605, 1055
NcoI	CCATGG	1 cut(s)	577
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	4 cut(s)	1006, 1024, 1039, 1128
NlaIII	CATG	3 cut(s)	554, 581, 1058
NlaIV	GGNNCC	2 cut(s)	194, 1041
NmuCI	GTSAC	2 cut(s)	20, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	940
PctI	GAATGC	1 cut(s)	903
PfeI	GAWTC	4 cut(s)	108, 278, 388, 416
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	1149
Ple19I	CGATCG	1 cut(s)	1009
PmaCI	CACGTG	1 cut(s)	935
PmlI	CACGTG	1 cut(s)	935
Ppu21I	YACGTR	2 cut(s)	233, 935
PshAI	GACNNNNGTC	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	541
PspCI	CACGTG	1 cut(s)	935
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	194, 1041
PspPI	GGNCC	1 cut(s)	144
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstNI	CAGNNNCTG	1 cut(s)	178
PsuI	RGATCY	3 cut(s)	1024, 1039, 1128
PvuI	CGATCG	1 cut(s)	1009
RsaI	GTAC	2 cut(s)	235, 954
RsaNI	GTAC	2 cut(s)	234, 953
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	6 cut(s)	59, 77, 251, 483, 566, 684
SatI	GCNGC	1 cut(s)	1148
Sau3AI	GATC	4 cut(s)	1006, 1024, 1039, 1128
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	543
SfaNI	GCATC	1 cut(s)	595
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	4 cut(s)	919, 1047, 1073, 1147
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	36, 134
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	2 cut(s)	442, 577
TaaI	ACNGT	4 cut(s)	144, 180, 787, 952
TaiI	ACGT	4 cut(s)	166, 235, 937, 1110
TaqI	TCGA	6 cut(s)	207, 889, 943, 973, 1005, 1009
TauI	GCSGC	1 cut(s)	1150
TfiI	GAWTC	4 cut(s)	108, 278, 388, 416
Tru1I	TTAA	6 cut(s)	59, 77, 251, 483, 566, 684
Tru9I	TTAA	6 cut(s)	59, 77, 251, 483, 566, 684
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	20, 215
Tsp45I	GTSAC	2 cut(s)	20, 215
TspDTI	ATGAA	7 cut(s)	35, 54, 429, 636, 779, 896, 1011
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1085, 1139
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	36, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.