pycom09g06210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0024642
Physical Location & Seq
Forward (+)
4583959 .. 4584246
288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06210.1

Sequence Viewer

Length: 288 bp
ATGAAACGGCCCAACGATGGGTGTGAGGAACCACCATCCATCAACGCTCTCCTGCTCTTCTCACTCATCTCCTTCACCCTTTTCCTCTGCGTCACTCTCAACCTCCATCACCTCCCTTATCCCTCTCTCTATCTCCTCCGCCCTCACCACCACCTCCCCTTCCCTCCTGTAATCCATCTTAATCTCCACCGCCAGTCCCAACTCCCTCACCAGCTCAAACGCATTCAACTGCTGCTCCGCGTACACTGGCCAAGCCGCAACCGGCACCCCATACCACAGACTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.22

Weight (kDa)

10.42

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024642)

Species Orthologous Gene IDs
pyrus_communis pycom05g22230 pycom05g22260 pycom09g06210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 264
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 139, 190, 238, 256
AcoI YGGCCR 1 cut(s) 248
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 2 cut(s) 17, 18
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AoxI GGCC 2 cut(s) 8, 248
ApeKI GCWGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 9
AsuHPI GGTGA 4 cut(s) 67, 101, 137, 200
BalI TGGCCA 1 cut(s) 250
BanI GGYRCC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 219
BccI CCATC 5 cut(s) 11, 43, 47, 114, 183
BceAI ACGGC 1 cut(s) 23
BfaI CTAG 1 cut(s) 286
BisI GCNGC 2 cut(s) 233, 256
BlsI GCNGC 2 cut(s) 234, 257
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 30, 266
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 18
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 2 cut(s) 193, 251
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 17, 18
BseNI ACTGG 2 cut(s) 193, 251
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 10, 250
BshNI GGYRCC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 262
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 17, 18
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 2 cut(s) 10, 250
BspACI CCGC 4 cut(s) 139, 190, 238, 256
BspANI GGCC 2 cut(s) 10, 250
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 30, 266
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 2 cut(s) 193, 251
BssAI RCCGGY 1 cut(s) 261
Bst6I CTCTTC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 240
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 219
BsuRI GGCC 2 cut(s) 10, 250
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 9
CseI GACGC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 242
CviJI RGCY 4 cut(s) 10, 214, 250, 255
CviKI_1 RGCY 4 cut(s) 10, 214, 250, 255
CviQI GTAC 1 cut(s) 242
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 128
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 233, 256
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 233, 256
FspBI CTAG 1 cut(s) 286
GluI GCNGC 2 cut(s) 233, 256
HaeIII GGCC 2 cut(s) 10, 250
HapII CCGG 1 cut(s) 262
HgaI GACGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 280
HpaII CCGG 1 cut(s) 262
HphI GGTGA 4 cut(s) 67, 101, 137, 200
Hpy166II GTNNAC 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 82, 169
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 65, 180, 206, 224, 232, 275
Lsp1109I GCAGC 1 cut(s) 219
MaeI CTAG 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 250
MlyI GAGTC 1 cut(s) 274
Mox20I TGGCCA 1 cut(s) 250
MscI TGGCCA 1 cut(s) 250
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 250
MspI CCGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 1 cut(s) 240
NlaIV GGNNCC 2 cut(s) 30, 266
NmuCI GTSAC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 222
PkrI GCNGC 2 cut(s) 234, 257
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 30, 266
PspPI GGNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 233, 256
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 1 cut(s) 274
SetI ASST 4 cut(s) 105, 114, 156, 216
SgeI CNNG 8 cut(s) 64, 179, 205, 223, 251, 259, 264, 274
SsiI CCGC 4 cut(s) 139, 190, 238, 256
SspMI CTAG 1 cut(s) 286
TauI GCSGC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 251
XspI CTAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.