pycom05g23150

Ribosomal protein-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25147422 .. 25147960
539 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23150.3

Sequence Viewer

Length: 387 bp
ATGATGAGATTGCACCACGTAGTTATGGTACATGGATGGTCTAGCTTGGTATATCCGCGATGGGGGGACCATATGTATTCAGGGGTGATCATGCTTGGTATATTCGCGATGGGTGATCACTGCCTGCACGATGAGTTTATGCCTATGGTCCTGCTTGGTATACCCGCGATGGGGGACCATACTTTTAGGATCGATCATATTTGGTTTGGTTTCGTTGAGTGGTCCAGAACTCGGGGTTGTTGGATTTTCCTTAGTTTTATATATATTTGTGTCAATGGTTTCGAGAATCTTTTTCTACGATTCGATTATGATTTCATAAGGTATGAATTTAGAATATATGAGAATGATTGTTATTACTTTGATCGATCACAGCCGATCATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

15.52

Weight (kDa)

5.82

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024424)

Species Orthologous Gene IDs
malus_domestica MD12G1153200.v1.1
pyrus_communis pycom05g23150 pycom07g07560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AccII CGCG 3 cut(s) 58, 107, 167
AciI CCGC 2 cut(s) 56, 165
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 4 cut(s) 62, 170, 171, 231
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 231
ApoI RAATTY 1 cut(s) 326
AseI ATTAAT 1 cut(s) 381
AspS9I GGNCC 4 cut(s) 67, 148, 175, 222
AsuHPI GGTGA 2 cut(s) 97, 125
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 4 cut(s) 67, 148, 175, 222
BccI CCATC 4 cut(s) 30, 54, 103, 163
BclI TGATCA 2 cut(s) 87, 115
BfaI CTAG 1 cut(s) 42
Bme18I GGWCC 4 cut(s) 67, 148, 175, 222
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 4 cut(s) 67, 148, 175, 222
BmiI GGNNCC 2 cut(s) 68, 176
Bsa29I ATCGAT 2 cut(s) 192, 364
BsaAI YACGTR 1 cut(s) 19
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 170, 171, 231
BseCI ATCGAT 2 cut(s) 192, 364
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 4 cut(s) 62, 170, 171, 231
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 3 cut(s) 58, 107, 167
BshVI ATCGAT 2 cut(s) 192, 364
BsiHKCI CYCGRG 1 cut(s) 231
BslFI GGGAC 2 cut(s) 80, 188
BslI CCNNNNNNNGG 4 cut(s) 62, 170, 171, 231
BsmFI GGGAC 2 cut(s) 80, 188
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
Bsp68I TCGCGA 1 cut(s) 107
BspACI CCGC 2 cut(s) 56, 165
BspDI ATCGAT 2 cut(s) 192, 364
BspFNI CGCG 3 cut(s) 58, 107, 167
BspLI GGNNCC 2 cut(s) 68, 176
BspPI GGATC 1 cut(s) 197
BssMI GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
BssNAI GTATAC 1 cut(s) 161
Bst1107I GTATAC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 3 cut(s) 58, 107, 167
BstKTI GATC 7 cut(s) 90, 118, 192, 196, 364, 368, 378
BstMBI GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
BstUI CGCG 3 cut(s) 58, 107, 167
BstZ17I GTATAC 1 cut(s) 161
Bsu15I ATCGAT 2 cut(s) 192, 364
BsuTUI ATCGAT 2 cut(s) 192, 364
BtgZI GCGATG 3 cut(s) 73, 122, 182
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
BtuMI TCGCGA 1 cut(s) 107
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 4 cut(s) 67, 148, 175, 222
ClaI ATCGAT 2 cut(s) 192, 364
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 32, 91
CviJI RGCY 2 cut(s) 45, 373
CviKI_1 RGCY 2 cut(s) 45, 373
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 1 cut(s) 251
DpnI GATC 7 cut(s) 89, 117, 191, 195, 363, 367, 377
DpnII GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
Eco47I GGWCC 4 cut(s) 67, 148, 175, 222
Eco88I CYCGRG 1 cut(s) 231
FaeI CATG 2 cut(s) 35, 94
FaqI GGGAC 2 cut(s) 80, 188
FatI CATG 2 cut(s) 31, 90
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 72
FbaI TGATCA 2 cut(s) 87, 115
FblI GTMKAC 1 cut(s) 160
FokI GGATG 1 cut(s) 48
FspBI CTAG 1 cut(s) 42
Hin1II CATG 2 cut(s) 35, 94
HinfI GANTC 2 cut(s) 286, 300
HphI GGTGA 2 cut(s) 97, 125
Hpy166II GTNNAC 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 106, 225, 283
Hpy8I GTNNAC 1 cut(s) 161
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 13, 127
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 35, 94
Ksp22I TGATCA 2 cut(s) 87, 115
Kzo9I GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
LpnPI CCDG 4 cut(s) 66, 137, 164, 238
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 18
MalI GATC 7 cut(s) 89, 117, 191, 195, 363, 367, 377
MboI GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
MluCI AATT 2 cut(s) 326, 382
MmeI TCCRAC 1 cut(s) 221
MseI TTAA 2 cut(s) 381, 385
MvnI CGCG 3 cut(s) 58, 107, 167
NdeI CATATG 1 cut(s) 72
NdeII GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
NlaIII CATG 2 cut(s) 35, 94
NlaIV GGNNCC 2 cut(s) 68, 176
NruI TCGCGA 1 cut(s) 107
PacI TTAATTAA 1 cut(s) 385
PfeI GAWTC 2 cut(s) 286, 300
Ppu21I YACGTR 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 68, 176
PspPI GGNCC 4 cut(s) 67, 148, 175, 222
RruI TCGCGA 1 cut(s) 107
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 381, 385
Sau3AI GATC 7 cut(s) 87, 115, 189, 193, 361, 365, 375
Sau96I GGNCC 4 cut(s) 67, 148, 175, 222
SetI ASST 3 cut(s) 21, 47, 323
SinI GGWCC 4 cut(s) 67, 148, 175, 222
Sse9I AATT 2 cut(s) 326, 382
SsiI CCGC 2 cut(s) 56, 165
SspMI CTAG 1 cut(s) 42
TaiI ACGT 1 cut(s) 21
TaqI TCGA 4 cut(s) 192, 282, 303, 364
TasI AATT 2 cut(s) 326, 382
TfiI GAWTC 2 cut(s) 286, 300
Tru1I TTAA 2 cut(s) 381, 385
Tru9I TTAA 2 cut(s) 381, 385
TscAI CASTG 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 304, 339
TspRI CASTG 1 cut(s) 125
VpaK11BI GGWCC 4 cut(s) 67, 148, 175, 222
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.