pycom05g24900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0024108
Physical Location & Seq
Forward (+)
26385363 .. 26387033
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24900.5

Sequence Viewer

Length: 801 bp
ATGGATTCTGCGAGGAGTTGGCTTCAGAAGTTTCAGCCGAGGGCGAAGAAGAAGGCGGCGGCGGAGGGTTCGAAGGCTGAGCAGCAGAATTCTGCTTCCGATGAGGCGCCGTCGAGCGTGACCAAACAGAAGGTGGAGGCGGCCAAACAGTACATTGAGAACCACTACAAGGCGCAAATGAAGTCCTTGCAGGAAAGGAAGGAGAGGCGGTGGATGCTCGAAAGGCGGCTCGCCGACGCGGATGTTTCGCAGGAGGATCAGATGAATGTGTTGAAGTATTTGGAGCAGAAGGAGACGGAGTACATGCATCTTCAGAGGCATAAAATGGGGGTTGATGACTTTCAGCTGTTGACCATCATCGGAAGGGGTGCATTCGGAGAGGTCAGAATCTGCAGAGAGAAATCTACTGGGCAGGTCTACGCCATGAAAAAGCTCAAGAAATCGGAGATGCTCCGGAGAGGCCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTCTTGCTGAGGTTGATAGTGCTTACATCGTTAAGCTCTATTGCTCCTTTCAAGATGAGGAATTTTTGTATCTTATAATGGAATATCTTCCCGGGGGTGATATGATGACATTACTAATGCGCAAAGATATCTTGACTGAAGATGAAGCCAGGTTTTACGTTGGAGAGACGGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGGGATATTAAGCCTGATAATTTACTGCTTGACCGTTACGGCCACATGAAGCTTTCAGATTTTGGGTTGTGTAAACCTTTGGGATCGATCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

267

Amino Acids

30.99

Weight (kDa)

8.54

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024108)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g03790
malus_domestica MD10G1242800.v1.1
pyrus_communis pycom05g24900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc16I TGCGCA 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 453
AciI CCGC 7 cut(s) 56, 59, 62, 140, 208, 226, 239
AclWI GGATC 2 cut(s) 264, 796
AcoI YGGCCR 2 cut(s) 141, 745
AcsI RAATTY 2 cut(s) 88, 554
AcuI CTGAAG 3 cut(s) 8, 296, 651
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 152, 302
AfiI CCNNNNNNNGG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 2 cut(s) 274, 545
AjnI CCWGG 2 cut(s) 462, 641
AluBI AGCT 5 cut(s) 346, 433, 482, 529, 757
AluI AGCT 5 cut(s) 346, 433, 482, 529, 757
Alw26I GTCTC 2 cut(s) 287, 653
AlwI GGATC 2 cut(s) 264, 796
AlwNI CAGNNNCTG 1 cut(s) 390
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 3 cut(s) 141, 460, 745
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 2 cut(s) 88, 554
Asp700I GAANNNNTTC 1 cut(s) 579
AspLEI GCGC 3 cut(s) 109, 175, 615
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 2 cut(s) 585, 586
AsuHPI GGTGA 1 cut(s) 602
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 664
BanI GGYRCC 1 cut(s) 106
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 362
BceAI ACGGC 2 cut(s) 94, 760
BciT130I CCWGG 2 cut(s) 464, 643
BcnI CCSGG 2 cut(s) 585, 586
BcoDI GTCTC 2 cut(s) 287, 653
BfmI CTRYAG 1 cut(s) 391
BfoI RGCGCY 1 cut(s) 110
BfuAI ACCTGC 1 cut(s) 403
BisI GCNGC 5 cut(s) 57, 60, 83, 141, 227
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 5 cut(s) 58, 61, 84, 142, 228
Bme1390I CCNGG 4 cut(s) 464, 585, 586, 643
Bme18I GGWCC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 4 cut(s) 464, 585, 586, 643
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 3 cut(s) 204, 316, 438
BmuI ACTGGG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 501
Bpu1102I GCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 2 cut(s) 585, 586
Bsa29I ATCGAT 1 cut(s) 791
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 38, 584, 585
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 6 cut(s) 194, 224, 284, 314, 648, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 453
BseBI CCWGG 2 cut(s) 464, 643
BseCI ATCGAT 1 cut(s) 791
BseDI CCNNGG 3 cut(s) 38, 584, 585
BseGI GGATG 3 cut(s) 219, 247, 699
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 69, 492
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 3 cut(s) 143, 462, 747
BshNI GGYRCC 1 cut(s) 106
BshVI ATCGAT 1 cut(s) 791
BsiEI CGRYCG 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 2 cut(s) 454, 585
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 2 cut(s) 287, 653
BsmBI CGTCTC 2 cut(s) 287, 653
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 3 cut(s) 143, 462, 747
BsoBI CYCGRG 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 71
Bsp13I TCCGGA 1 cut(s) 453
Bsp143I GATC 3 cut(s) 256, 788, 792
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 7 cut(s) 56, 59, 62, 140, 208, 226, 239
BspANI GGCC 3 cut(s) 143, 462, 747
BspCNI CTCAG 2 cut(s) 70, 493
BspDI ATCGAT 1 cut(s) 791
BspEI TCCGGA 1 cut(s) 453
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 395
BspMI ACCTGC 1 cut(s) 403
BspPI GGATC 2 cut(s) 264, 796
BspT104I TTCGAA 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 3 cut(s) 38, 584, 585
BssMI GATC 3 cut(s) 256, 788, 792
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 464, 643
Bst4CI ACNGT 3 cut(s) 150, 664, 740
BstACI GRCGYC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 78, 501
BstF5I GGATG 3 cut(s) 219, 247, 699
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 3 cut(s) 109, 175, 615
BstKTI GATC 3 cut(s) 259, 791, 795
BstMAI GTCTC 2 cut(s) 287, 653
BstMBI GATC 3 cut(s) 256, 788, 792
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 2 cut(s) 214, 223
BstNI CCWGG 2 cut(s) 464, 643
BstNSI RCATGY 2 cut(s) 307, 476
BstSCI CCNGG 4 cut(s) 462, 583, 584, 641
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 94
Bsu15I ATCGAT 1 cut(s) 791
BsuRI GGCC 3 cut(s) 143, 462, 747
BsuTUI ATCGAT 1 cut(s) 791
BtsCI GGATG 3 cut(s) 219, 247, 699
BveI ACCTGC 1 cut(s) 403
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 390
CfoI GCGC 3 cut(s) 109, 175, 615
Cfr13I GGNCC 1 cut(s) 664
Cfr9I CCCGGG 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 791
CseI GACGC 1 cut(s) 245
Csp6I GTAC 2 cut(s) 151, 301
CviAII CATG 4 cut(s) 304, 424, 473, 751
CviQI GTAC 2 cut(s) 151, 301
DdeI CTNAG 2 cut(s) 78, 501
DinI GGCGCC 1 cut(s) 108
DpnI GATC 3 cut(s) 258, 790, 794
DpnII GATC 3 cut(s) 256, 788, 792
EaeI YGGCCR 2 cut(s) 141, 745
EciI GGCGGA 1 cut(s) 77
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 3 cut(s) 8, 296, 651
Eco88I CYCGRG 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 462, 641
EcoRV GATATC 1 cut(s) 622
EcoT22I ATGCAT 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
Esp3I CGTCTC 2 cut(s) 287, 653
FaeI CATG 4 cut(s) 307, 427, 476, 754
FaiI YATR 7 cut(s) 305, 321, 425, 474, 569, 596, 752
FatI CATG 4 cut(s) 303, 423, 472, 750
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 5 cut(s) 57, 60, 83, 141, 227
FokI GGATG 3 cut(s) 226, 254, 686
Fsp4HI GCNGC 5 cut(s) 57, 60, 83, 141, 227
FspI TGCGCA 1 cut(s) 614
GlaI GCGC 3 cut(s) 108, 174, 614
GluI GCNGC 5 cut(s) 57, 60, 83, 141, 227
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 3 cut(s) 143, 462, 747
HapII CCGG 2 cut(s) 454, 585
HgaI GACGC 1 cut(s) 245
HhaI GCGC 3 cut(s) 109, 175, 615
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 4 cut(s) 307, 427, 476, 754
Hin6I GCGC 3 cut(s) 107, 173, 613
HinP1I GCGC 3 cut(s) 107, 173, 613
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 3 cut(s) 5, 387, 677
HpaII CCGG 2 cut(s) 454, 585
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 3 cut(s) 351, 418, 779
Hpy188I TCNGA 9 cut(s) 27, 100, 261, 315, 362, 377, 386, 445, 763
Hpy188III TCNNGA 4 cut(s) 436, 454, 545, 625
Hpy8I GTNNAC 3 cut(s) 351, 418, 779
Hpy99I CGWCG 2 cut(s) 115, 239
HpyAV CCTTC 6 cut(s) 46, 67, 124, 193, 283, 357
HpyCH4III ACNGT 3 cut(s) 150, 664, 740
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 4 cut(s) 190, 307, 371, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 223
HpyF3I CTNAG 2 cut(s) 78, 501
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 4 cut(s) 307, 427, 476, 754
HspAI GCGC 3 cut(s) 107, 173, 613
KasI GGCGCC 1 cut(s) 106
Kpn2I TCCGGA 1 cut(s) 453
Kzo9I GATC 3 cut(s) 256, 788, 792
LmnI GCTCC 3 cut(s) 283, 456, 542
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 204, 316, 438
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 2 cut(s) 118, 740
MalI GATC 3 cut(s) 258, 790, 794
MboI GATC 3 cut(s) 256, 788, 792
MboII GAAGA 6 cut(s) 58, 61, 302, 485, 572, 644
MluCI AATT 3 cut(s) 88, 554, 724
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 1 cut(s) 634
Mph1103I ATGCAT 1 cut(s) 309
MroI TCCGGA 1 cut(s) 453
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 4 cut(s) 477, 525, 714, 799
MspA1I CMGCKG 1 cut(s) 346
MspI CCGG 2 cut(s) 454, 585
MspR9I CCNGG 4 cut(s) 464, 585, 586, 643
Mva1269I GAATGC 1 cut(s) 371
MvaI CCWGG 2 cut(s) 464, 643
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 214, 223
NarI GGCGCC 1 cut(s) 107
NciI CCSGG 2 cut(s) 585, 586
NdeII GATC 3 cut(s) 256, 788, 792
NlaIII CATG 4 cut(s) 307, 427, 476, 754
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 118
NsbI TGCGCA 1 cut(s) 614
NsiI ATGCAT 1 cut(s) 309
NspI RCATGY 2 cut(s) 307, 476
NspV TTCGAA 1 cut(s) 71
PciI ACATGT 1 cut(s) 472
PctI GAATGC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 5, 387
PkrI GCNGC 5 cut(s) 58, 61, 84, 142, 228
Ple19I CGATCG 1 cut(s) 795
PleI GAGTC 1 cut(s) 685
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 685
PscI ACATGT 1 cut(s) 472
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 462, 641
PspGI CCWGG 2 cut(s) 462, 641
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 664
PstI CTGCAG 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 390
PvuI CGATCG 1 cut(s) 795
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 152, 302
RsaNI GTAC 2 cut(s) 151, 301
SaqAI TTAA 4 cut(s) 477, 525, 714, 799
SatI GCNGC 5 cut(s) 57, 60, 83, 141, 227
Sau3AI GATC 3 cut(s) 256, 788, 792
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 4 cut(s) 464, 585, 586, 643
SfaNI GCATC 3 cut(s) 204, 316, 438
SfcI CTRYAG 1 cut(s) 391
SfoI GGCGCC 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 1 cut(s) 664
SmaI CCCGGG 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 88, 554, 724
SsiI CCGC 7 cut(s) 56, 59, 62, 140, 208, 226, 239
SspDI GGCGCC 1 cut(s) 106
StyD4I CCNGG 4 cut(s) 462, 583, 584, 641
TaaI ACNGT 3 cut(s) 150, 664, 740
TaiI ACGT 1 cut(s) 654
TaqI TCGA 4 cut(s) 71, 113, 219, 791
TasI AATT 3 cut(s) 88, 554, 724
TatI WGTACW 2 cut(s) 150, 300
TauI GCSGC 4 cut(s) 59, 62, 143, 229
TfiI GAWTC 2 cut(s) 5, 387
Tru1I TTAA 4 cut(s) 477, 525, 714, 799
Tru9I TTAA 4 cut(s) 477, 525, 714, 799
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 5 cut(s) 194, 278, 440, 651, 767
TspGWI ACGGA 1 cut(s) 311
TspMI CCCGGG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 2 cut(s) 88, 554
XceI RCATGY 2 cut(s) 307, 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 584
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.