Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029284

Physical Location & Seq

Genomic Coordinates Reverse (-)

26837943 .. 26838188

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTAATTACTCAGAGGCCCACATTTGCCACTGCCTGACCCTCCTATCTACTCTCCGGCGCAATTCCGCAGTCACGATCACCGGCAACCGGCAAAAGACCGGCGAGGAATTCGTGGGTGGTGTCATGTATCTGGCCCAAGGCCTGCTCCAACTCGGCCTATGTTCCGGCGACGTCGTTTCCATTGCTGCCTTCAACAGGTGCCGCTTCACGTGTACAATGCTTTTCAAAGACTCAATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0031090 GO:0031903 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

82

Amino Acids

8.85

Weight (kDa)

8.37

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029284)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25470
rosa_multiflora	Rmu_sc0034683.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	201
AciI	CCGC	2 cut(s)	69, 205
AcsI	RAATTY	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	90, 198
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	196, 229
AoxI	GGCC	4 cut(s)	18, 135, 142, 157
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	19, 136
AsuHPI	GGTGA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	201
BbrPI	CACGTG	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	189, 205
BlsI	GCNGC	2 cut(s)	190, 206
BmgT120I	GGNCC	2 cut(s)	19, 136
BmiI	GGNNCC	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 198
Bse118I	RCCGGY	3 cut(s)	83, 90, 101
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	90, 198
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	175
BshFI	GGCC	4 cut(s)	20, 137, 144, 159
BshNI	GGYRCC	1 cut(s)	201
BsiSI	CCGG	5 cut(s)	58, 84, 91, 102, 168
BslI	CCNNNNNNNGG	2 cut(s)	90, 198
BsnI	GGCC	4 cut(s)	20, 137, 144, 159
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	69, 205
BspANI	GGCC	4 cut(s)	20, 137, 144, 159
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	3 cut(s)	83, 90, 101
BsrGI	TGTACA	1 cut(s)	215
BssAI	RCCGGY	3 cut(s)	83, 90, 101
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	1 cut(s)	78
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	215
BstBAI	YACGTR	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	1 cut(s)	13
BstENI	CCTNNNNNAGG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	175
BsuRI	GGCC	4 cut(s)	20, 137, 144, 159
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	3 cut(s)	83, 90, 101
Cfr13I	GGNCC	2 cut(s)	19, 136
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	4 cut(s)	20, 137, 144, 159
CviKI_1	RGCY	4 cut(s)	20, 137, 144, 159
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	80
DpnII	GATC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	128, 163
FatI	CATG	1 cut(s)	126
Fnu4HI	GCNGC	2 cut(s)	189, 205
Fsp4HI	GCNGC	2 cut(s)	189, 205
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	189, 205
HaeIII	GGCC	4 cut(s)	20, 137, 144, 159
HapII	CCGG	5 cut(s)	58, 84, 91, 102, 168
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	5 cut(s)	58, 84, 91, 102, 168
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	176, 179
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	174, 212
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	2 cut(s)	174, 212
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	153
LpnPI	CCDG	9 cut(s)	50, 71, 97, 104, 115, 119, 158, 181, 184
Lsp1109I	GCAGC	1 cut(s)	175
MaeII	ACGT	2 cut(s)	174, 212
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	80
MboI	GATC	1 cut(s)	78
MluCI	AATT	3 cut(s)	7, 64, 110
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	3 cut(s)	10, 53, 100
MspI	CCGG	5 cut(s)	58, 84, 91, 102, 168
NdeII	GATC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	203
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	190, 206
PleI	GAGTC	1 cut(s)	227
PmaCI	CACGTG	1 cut(s)	213
PmlI	CACGTG	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	227
Ppu21I	YACGTR	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	19, 136
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SatI	GCNGC	2 cut(s)	189, 205
Sau3AI	GATC	1 cut(s)	78
Sau96I	GGNCC	2 cut(s)	19, 136
SchI	GAGTC	1 cut(s)	227
SetI	ASST	3 cut(s)	177, 203, 215
Sse9I	AATT	3 cut(s)	7, 64, 110
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	69, 205
StuI	AGGCCT	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	139
TaiI	ACGT	2 cut(s)	177, 215
TasI	AATT	3 cut(s)	7, 64, 110
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	1 cut(s)	207
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	73
TspRI	CASTG	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	110
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.