Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034683.1

Orthogroup ID

OG0029284

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 515

Gene Structure 514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 344 bp

atgggtacttactcagacgcccacatttgccactgcctgagcctcttatccactcttcgtcgcaactccgtggtcaccgtcgccagaaaccagccaaagaccggcaaggagttcgtggaccgcgtcatgggtctggcccatggcctacttcaactgggactccagtccggtgacgtcgtctccattgctgccttcaacagtgagttgtatttggagtggttacttgcaattgcatatgttggtgctgtagctgctcctcttaattatagatggagttatgaagaggcagttttggcaatggaggtggtgaggcctgcaatgctggtttctgatgatagctgtgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0006732 GO:0006766 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016020 GO:0031090 GO:0031903 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0042180 GO:0042181 GO:0042372 GO:0042374 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

115

Amino Acids

12.56

Weight (kDa)

5.46

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029284)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g25470
rosa_multiflora	Rmu_sc0034683.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	121
AcyI	GRCGYC	2 cut(s)	18, 174
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	101, 127
AgsI	TTSAA	2 cut(s)	152, 196
AluBI	AGCT	2 cut(s)	251, 339
AluI	AGCT	2 cut(s)	251, 339
Alw26I	GTCTC	1 cut(s)	184
AoxI	GGCC	3 cut(s)	135, 142, 311
ApeKI	GCWGC	2 cut(s)	188, 251
AspS9I	GGNCC	2 cut(s)	118, 136
AsuHPI	GGTGA	3 cut(s)	67, 182, 319
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	175, 238
BccI	CCATC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcoDI	GTCTC	1 cut(s)	184
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	189, 252
BlsI	GCNGC	2 cut(s)	190, 253
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	118, 136
BmrI	ACTGGG	1 cut(s)	164
BmuI	ACTGGG	1 cut(s)	164
BoxI	GACNNNNGTC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	18, 174
BsaJI	CCNNGG	2 cut(s)	69, 139
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 164, 174, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 127
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	159, 163
Bse3DI	GCAATG	3 cut(s)	183, 303, 324
BseDI	CCNNGG	2 cut(s)	69, 139
BseLI	CCNNNNNNNGG	2 cut(s)	101, 127
BseMI	GCAATG	3 cut(s)	183, 303, 324
BseMII	CTCAG	2 cut(s)	27, 29
BseNI	ACTGG	2 cut(s)	159, 163
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	175, 238
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	137, 144, 313
BsiSI	CCGG	2 cut(s)	102, 168
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	101, 127
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	3 cut(s)	137, 144, 313
Bsp19I	CCATGG	1 cut(s)	139
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	3 cut(s)	137, 144, 313
BspCNI	CTCAG	2 cut(s)	26, 30
BspFNI	CGCG	1 cut(s)	123
BsrDI	GCAATG	3 cut(s)	183, 303, 324
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	159, 163
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	69, 139
BssNI	GRCGYC	2 cut(s)	18, 174
BssT1I	CCWWGG	1 cut(s)	139
Bst4CI	ACNGT	2 cut(s)	79, 200
Bst6I	CTCTTC	2 cut(s)	60, 276
BstACI	GRCGYC	2 cut(s)	18, 174
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	13, 38
BstDSI	CCRYGG	2 cut(s)	69, 139
BstEII	GGTNACC	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 293, 319
BstPAI	GACNNNNGTC	1 cut(s)	163
BstPI	GGTNACC	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	175, 238
BsuRI	GGCC	3 cut(s)	137, 144, 313
BtgI	CCRYGG	2 cut(s)	69, 139
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	31, 205
Cac8I	GCNNGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	118, 136
CseI	GACGC	2 cut(s)	26, 112
Csp6I	GTAC	1 cut(s)	6
CspCI	CAANNNNNGTGG	2 cut(s)	285, 320
CviAII	CATG	2 cut(s)	127, 140
CviJI	RGCY	7 cut(s)	42, 94, 137, 144, 251, 313, 339
CviKI_1	RGCY	7 cut(s)	42, 94, 137, 144, 251, 313, 339
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	13, 38
Eam1104I	CTCTTC	2 cut(s)	60, 276
EarI	CTCTTC	2 cut(s)	60, 276
Eco130I	CCWWGG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	118
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	139
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	130, 143
FaiI	YATR	6 cut(s)	128, 141, 235, 237, 267, 279
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	126, 139
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	189, 252
Fsp4HI	GCNGC	2 cut(s)	189, 252
GluI	GCNGC	2 cut(s)	189, 252
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	137, 144, 313
HapII	CCGG	2 cut(s)	102, 168
HgaI	GACGC	2 cut(s)	26, 112
Hin1I	GRCGYC	2 cut(s)	18, 174
Hin1II	CATG	2 cut(s)	130, 143
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	2 cut(s)	102, 168
HphI	GGTGA	3 cut(s)	67, 182, 319
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	16, 331
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	3 cut(s)	63, 83, 179
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	79, 200
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	227, 233, 317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 293, 319
HpyF3I	CTNAG	2 cut(s)	13, 38
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	18, 174
Hsp92II	CATG	2 cut(s)	130, 143
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	175, 238
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	3 cut(s)	73, 170, 219
MboII	GAAGA	2 cut(s)	47, 293
MfeI	CAATTG	1 cut(s)	228
MluCI	AATT	2 cut(s)	228, 262
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	53, 267, 277, 295, 303
MseI	TTAA	1 cut(s)	261
MspI	CCGG	2 cut(s)	102, 168
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	251, 293, 319
NcoI	CCATGG	1 cut(s)	139
NdeI	CATATG	1 cut(s)	235
NlaIII	CATG	2 cut(s)	130, 143
NmuCI	GTSAC	2 cut(s)	73, 170
PceI	AGGCCT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PflFI	GACNNNGTC	2 cut(s)	122, 176
PkrI	GCNGC	2 cut(s)	190, 253
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PshAI	GACNNNNGTC	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	118, 136
PsyI	GACNNNGTC	2 cut(s)	122, 176
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	189, 252
Sau96I	GGNCC	2 cut(s)	118, 136
SchI	GAGTC	1 cut(s)	153
SetI	ASST	4 cut(s)	177, 253, 306, 341
SfcI	CTRYAG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	228, 262
SseBI	AGGCCT	1 cut(s)	313
SsiI	CCGC	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	79, 200
TaiI	ACGT	1 cut(s)	177
TasI	AATT	2 cut(s)	228, 262
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	38, 205
TseFI	GTSAC	2 cut(s)	73, 170
TseI	GCWGC	2 cut(s)	188, 251
Tsp45I	GTSAC	2 cut(s)	73, 170
TspDTI	ATGAA	1 cut(s)	294
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	38, 205
Tth111I	GACNNNGTC	2 cut(s)	122, 176
VpaK11BI	GGWCC	1 cut(s)	118
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.