Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029285

Physical Location & Seq

Genomic Coordinates Reverse (-)

27754838 .. 27755808

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGTTTGCGTCCAGGGCATTGTCACCAAATGTTCTCTTGTGAGGCCAAAAGTTGTTAAGAGTGTTCACTTCTGCCCTAGTACCGGAAACTTCACCTCTCGAGAATACCGAGACATTACATCCAATATGGGCTTGCCTACAGGAGCAGTTTATCCTACTAGGGACGAAAATGGTAACTTATTGGTGACTGAGTATGGACTATGCAAATACAAAGATCATCAAACTTTATCTATGCAAGAAGTTCATGAGAACTCTGCTCCTGGTCAGCTTCCGCGGACAGTGGATGTCATAGTTGAGGATGACCTCGTTGATTCATGCAAACCAGGAGACCGTGTGGCGATTGTAGGGATTTACAAAGCTCTACCTGGTAAAAGTAAGGGAAGCGTGAATGGAGTATTCAGGACTGTTCTCATAGCGAACAACGTTTCGCTGCTCAACAAAGAAAGCAGAAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

153

Amino Acids

16.64

Weight (kDa)

8.99

Isoelectric Point (pI)

12.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029285)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g26500
rosa_samantha	Rh5AG106000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	274
AciI	CCGC	2 cut(s)	272, 274
AclI	AACGTT	1 cut(s)	423
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	12, 259, 322, 364
AluBI	AGCT	2 cut(s)	268, 359
AluI	AGCT	2 cut(s)	268, 359
Alw26I	GTCTC	2 cut(s)	105, 321
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	430
AsuHPI	GGTGA	3 cut(s)	16, 85, 196
AvaI	CYCGRG	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	417
BciT130I	CCWGG	4 cut(s)	14, 261, 324, 366
BcoDI	GTCTC	2 cut(s)	105, 321
BfaI	CTAG	2 cut(s)	78, 159
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	4 cut(s)	14, 261, 324, 366
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	4 cut(s)	14, 261, 324, 366
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	13, 272
BsaWI	WCCGGW	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	4 cut(s)	14, 261, 324, 366
BseDI	CCNNGG	2 cut(s)	13, 272
BseGI	GGATG	3 cut(s)	119, 289, 304
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	105, 321
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	272, 274
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	274
BspHI	TCATGA	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	13, 272
BssMI	GATC	1 cut(s)	214
Bst2UI	CCWGG	4 cut(s)	14, 261, 324, 366
Bst4CI	ACNGT	3 cut(s)	280, 332, 406
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	189
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	119, 289, 304
BstFNI	CGCG	1 cut(s)	274
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	105, 321
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNI	CCWGG	4 cut(s)	14, 261, 324, 366
BstSCI	CCNGG	4 cut(s)	12, 259, 322, 364
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	119, 289, 304
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	244
Cfr42I	CCGCGG	1 cut(s)	275
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	245, 315
CviJI	RGCY	4 cut(s)	46, 132, 268, 359
CviKI_1	RGCY	4 cut(s)	46, 132, 268, 359
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	4 cut(s)	12, 259, 322, 364
FaeI	CATG	2 cut(s)	248, 318
FaiI	YATR	8 cut(s)	128, 195, 202, 233, 246, 290, 316, 413
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	244, 314
Fnu4HI	GCNGC	1 cut(s)	431
FokI	GGATG	3 cut(s)	106, 296, 311
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	2 cut(s)	78, 159
GluI	GCNGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	248, 318
HinfI	GANTC	1 cut(s)	311
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	3 cut(s)	16, 85, 196
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188III	TCNNGA	4 cut(s)	99, 101, 245, 400
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	3 cut(s)	280, 332, 406
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	204, 235, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	248, 318
KspI	CCGCGG	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	143, 262
Lsp1109I	GCAGC	1 cut(s)	417
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	2 cut(s)	78, 159
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	22, 173, 184
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	36, 106, 289, 314
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	274
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	4 cut(s)	14, 261, 324, 366
MvaI	CCWGG	4 cut(s)	14, 261, 324, 366
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	248, 318
NmuCI	GTSAC	2 cut(s)	22, 184
PaeR7I	CTCGAG	1 cut(s)	99
PagI	TCATGA	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	423
Psp6I	CCWGG	4 cut(s)	12, 259, 322, 364
PspGI	CCWGG	4 cut(s)	12, 259, 322, 364
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SacII	CCGCGG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	1 cut(s)	214
ScrFI	CCNGG	4 cut(s)	14, 261, 324, 366
SetI	ASST	6 cut(s)	98, 270, 306, 361, 367, 426
SexAI	ACCWGGT	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	99
Sfr303I	CCGCGG	1 cut(s)	275
SgrBI	CCGCGG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
SsiI	CCGC	2 cut(s)	272, 274
SspMI	CTAG	2 cut(s)	78, 159
StyD4I	CCNGG	4 cut(s)	12, 259, 322, 364
TaaI	ACNGT	3 cut(s)	280, 332, 406
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	2 cut(s)	22, 184
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	2 cut(s)	22, 184
TspDTI	ATGAA	2 cut(s)	233, 303
TspRI	CASTG	1 cut(s)	285
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	2 cut(s)	78, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.