Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0028299

Physical Location & Seq

Genomic Coordinates Reverse (-)

1498179 .. 1498806

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCTCAAGACATGAAATTTGAAAACACTGCCGGACCCGACCAAGCTGTCGCAATGCGCTATGGCACCAACCAAGCGGTGTTTTACTGTTGTAGCTTCAAAGGCTATCAAGATACATTATACGTGAAACTATCTGATCAGTTCACTTGCATTGTTATTCACAATTGCCATGTCACGGCCGCTGAAGATTTAAGACATGTGCAACTCTCTTTCCGAACATATTTGAGTACTTTGAACGGATTGGTGGATCCTGCTGGTCGGATGCCGTGGAATGGAAGTGTTGGTGGTGCCTATACATGCGGGAGGGTCAAGTGGCTTGGTTATCACGTAATAAGGAGTGCAGCGGATGCTGAAAAATTTACTGTTAGGAACTTCATAAGCGGAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

130

Amino Acids

14.39

Weight (kDa)

7.65

Isoelectric Point (pI)

18.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028299)

Species	Orthologous Gene IDs
malus_domestica	MD06G1019500.v1.1
pyrus_communis	pycom06g01450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	65, 287
AciI	CCGC	5 cut(s)	77, 180, 300, 344, 381
AclWI	GGATC	2 cut(s)	242, 255
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	17, 356
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	175, 272
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	3 cut(s)	23, 100, 235
AluBI	AGCT	2 cut(s)	47, 96
AluI	AGCT	2 cut(s)	47, 96
AlwI	GGATC	2 cut(s)	242, 255
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	17, 356
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	2 cut(s)	65, 287
BbvI	GCAGC	1 cut(s)	353
BceAI	ACGGC	2 cut(s)	192, 250
BclI	TGATCA	1 cut(s)	136
BisI	GCNGC	2 cut(s)	180, 342
BlsI	GCNGC	2 cut(s)	181, 343
BmcAI	AGTACT	1 cut(s)	229
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	4 cut(s)	37, 67, 249, 289
BmsI	GCATC	2 cut(s)	252, 337
BsaAI	YACGTR	2 cut(s)	124, 328
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 272
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	2 cut(s)	267, 352
BseLI	CCNNNNNNNGG	2 cut(s)	175, 272
BseMI	GCAATG	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	360
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	2 cut(s)	65, 287
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	175, 272
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	136, 247
BspACI	CCGC	5 cut(s)	77, 180, 300, 344, 381
BspANI	GGCC	1 cut(s)	179
BspLI	GGNNCC	4 cut(s)	37, 67, 249, 289
BspPI	GGATC	2 cut(s)	242, 255
BspT107I	GGYRCC	2 cut(s)	65, 287
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	136, 247
Bst4CI	ACNGT	2 cut(s)	89, 364
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	124, 328
BstDSI	CCRYGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	267, 352
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	139, 250
BstMBI	GATC	2 cut(s)	136, 247
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 347
BstNSI	RCATGY	2 cut(s)	200, 300
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	267, 352
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	4 cut(s)	13, 170, 197, 297
CviJI	RGCY	6 cut(s)	5, 47, 96, 105, 179, 316
CviKI_1	RGCY	6 cut(s)	5, 47, 96, 105, 179, 316
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	2 cut(s)	138, 249
DpnII	GATC	2 cut(s)	136, 247
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	177
EagI	CGGCCG	1 cut(s)	177
EclXI	CGGCCG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	35
Eco52I	CGGCCG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	204
FaeI	CATG	4 cut(s)	16, 173, 200, 300
FaiI	YATR	9 cut(s)	14, 63, 121, 171, 198, 220, 294, 298, 377
FatI	CATG	4 cut(s)	12, 169, 196, 296
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	180, 342
FokI	GGATG	2 cut(s)	274, 359
Fsp4HI	GCNGC	2 cut(s)	180, 342
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	180, 342
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	16, 173, 200, 300
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	136, 215, 261
Hpy188III	TCNNGA	2 cut(s)	8, 110
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	2 cut(s)	89, 364
HpyCH4IV	ACGT	2 cut(s)	123, 327
HpyCH4V	TGCA	3 cut(s)	150, 202, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 347
HpySE526I	ACGT	2 cut(s)	123, 327
Hsp92II	CATG	4 cut(s)	16, 173, 200, 300
HspAI	GCGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 247
LpnPI	CCDG	3 cut(s)	46, 240, 264
Lsp1109I	GCAGC	1 cut(s)	353
LweI	GCATC	2 cut(s)	252, 337
MaeII	ACGT	2 cut(s)	123, 327
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	138, 249
MboI	GATC	2 cut(s)	136, 247
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	163
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	3 cut(s)	17, 163, 356
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	1 cut(s)	297
MseI	TTAA	2 cut(s)	191, 388
MspA1I	CMGCKG	2 cut(s)	182, 344
MspI	CCGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	102, 347
NdeII	GATC	2 cut(s)	136, 247
NlaIII	CATG	4 cut(s)	16, 173, 200, 300
NlaIV	GGNNCC	4 cut(s)	37, 67, 249, 289
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	2 cut(s)	200, 300
PciI	ACATGT	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	181, 343
Ppu21I	YACGTR	2 cut(s)	124, 328
PscI	ACATGT	1 cut(s)	196
PspN4I	GGNNCC	4 cut(s)	37, 67, 249, 289
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	191, 388
SatI	GCNGC	2 cut(s)	180, 342
Sau3AI	GATC	2 cut(s)	136, 247
Sau96I	GGNCC	1 cut(s)	35
ScaI	AGTACT	1 cut(s)	229
SetI	ASST	4 cut(s)	49, 98, 126, 330
SfaNI	GCATC	2 cut(s)	252, 337
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	3 cut(s)	17, 163, 356
SsiI	CCGC	5 cut(s)	77, 180, 300, 344, 381
TaaI	ACNGT	2 cut(s)	89, 364
TaiI	ACGT	2 cut(s)	126, 330
TasI	AATT	3 cut(s)	17, 163, 356
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	191, 388
Tru9I	TTAA	2 cut(s)	191, 388
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	29, 364
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	2 cut(s)	17, 356
XceI	RCATGY	2 cut(s)	200, 300
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.