pycom06g01630

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0024643
Physical Location & Seq
Forward (+)
1744914 .. 1745363
450 bp
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UTR
Exon/CDS
Intron
pycom06g01630.1

Sequence Viewer

Length: 450 bp
ATGGAAAGAGTACAACCAGACCATTTTGCGTGGAAATCTAACAACAACAACCGGTACGTGCTCTTACAAGATGAAAATATCAAAAATCAAGAGGGGATTCTCGAATTCACCGGAGAGGTTTCTGGCCTAAATTTCACATTGGAGAATAAAGACTCTGGACACGTGAATATCAAGCTCTCTGAAACCAACTTATACTTGACAGGGGCGCTGAAGGAAGGAGTGTTTGGATGGATCGTGGCCACCGCTCACACACCAAAAGAAAACATGAATGATGAAAATTGCACATTGTTCAAGCCAGAGAAGGTCGGACAAAATACCTTCCGAATAAGCCTTGCGTACACCCAACGCTATTTAAGGCCATGCGATGTTGCAGGTTTGGAAGCAGTCCTCCGCGCAATCAACTCACGCGCGAACCCTCTAGTGGATCTCTTTACAATCACTGGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

150

Amino Acids

16.79

Weight (kDa)

5.61

Isoelectric Point (pI)

20.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 6 - 114 2.3e-10 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024643)

Species Orthologous Gene IDs
pyrus_communis pycom06g01630 pycom06g01730 pycom12486g00030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
AccBSI CCGCTC 1 cut(s) 245
AccII CGCG 3 cut(s) 393, 408, 410
AciI CCGC 2 cut(s) 243, 391
AclWI GGATC 2 cut(s) 239, 432
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 2 cut(s) 104, 130
AcuI CTGAAG 1 cut(s) 230
AcvI CACGTG 1 cut(s) 163
AfaI GTAC 3 cut(s) 12, 56, 338
AfiI CCNNNNNNNGG 1 cut(s) 421
AflIII ACRYGT 1 cut(s) 160
AgeI ACCGGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 2 cut(s) 239, 432
AoxI GGCC 3 cut(s) 124, 237, 356
ApoI RAATTY 2 cut(s) 104, 130
AsiGI ACCGGT 1 cut(s) 51
AspLEI GCGC 3 cut(s) 208, 395, 410
AsuHPI GGTGA 1 cut(s) 100
BalI TGGCCA 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 222
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 362
BmrI ACTGGG 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 450
BsaAI YACGTR 2 cut(s) 58, 163
BsaWI WCCGGW 2 cut(s) 51, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 445
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 421
BseNI ACTGG 1 cut(s) 445
Bsh1236I CGCG 3 cut(s) 393, 408, 410
BshFI GGCC 3 cut(s) 126, 239, 358
BshTI ACCGGT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 52, 111
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 3 cut(s) 126, 239, 358
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 231, 424
BspACI CCGC 2 cut(s) 243, 391
BspANI GGCC 3 cut(s) 126, 239, 358
BspFNI CGCG 3 cut(s) 393, 408, 410
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 2 cut(s) 239, 432
BsrBI CCGCTC 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 2 cut(s) 231, 424
BstBAI YACGTR 2 cut(s) 58, 163
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 3 cut(s) 393, 408, 410
BstH2I RGCGCY 1 cut(s) 209
BstHHI GCGC 3 cut(s) 208, 395, 410
BstKTI GATC 2 cut(s) 234, 427
BstMBI GATC 2 cut(s) 231, 424
BstUI CGCG 3 cut(s) 393, 408, 410
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 3 cut(s) 126, 239, 358
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 438
BveI ACCTGC 1 cut(s) 362
CfoI GCGC 3 cut(s) 208, 395, 410
Cfr10I RCCGGY 1 cut(s) 51
Csp6I GTAC 3 cut(s) 11, 55, 337
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 2 cut(s) 265, 360
CviJI RGCY 6 cut(s) 126, 175, 239, 295, 330, 358
CviKI_1 RGCY 6 cut(s) 126, 175, 239, 295, 330, 358
CviQI GTAC 3 cut(s) 11, 55, 337
DpnI GATC 2 cut(s) 233, 426
DpnII GATC 2 cut(s) 231, 424
EaeI YGGCCR 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 230
Eco72I CACGTG 1 cut(s) 163
EcoRI GAATTC 1 cut(s) 104
FaeI CATG 2 cut(s) 268, 363
FaiI YATR 3 cut(s) 193, 266, 361
FatI CATG 2 cut(s) 264, 359
FokI GGATG 1 cut(s) 240
FspBI CTAG 1 cut(s) 419
GlaI GCGC 3 cut(s) 207, 394, 409
HaeII RGCGCY 1 cut(s) 209
HaeIII GGCC 3 cut(s) 126, 239, 358
HapII CCGG 2 cut(s) 52, 111
HhaI GCGC 3 cut(s) 208, 395, 410
Hin1II CATG 2 cut(s) 268, 363
Hin6I GCGC 3 cut(s) 206, 393, 408
HinP1I GCGC 3 cut(s) 206, 393, 408
HinfI GANTC 2 cut(s) 97, 152
HpaII CCGG 2 cut(s) 52, 111
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 339
Hpy188I TCNGA 3 cut(s) 181, 308, 323
Hpy188III TCNNGA 3 cut(s) 89, 101, 156
Hpy8I GTNNAC 1 cut(s) 339
HpyAV CCTTC 4 cut(s) 205, 209, 295, 328
HpyCH4IV ACGT 2 cut(s) 57, 162
HpyCH4V TGCA 2 cut(s) 282, 371
HpySE526I ACGT 2 cut(s) 57, 162
Hsp92II CATG 2 cut(s) 268, 363
HspAI GCGC 3 cut(s) 206, 393, 408
Kzo9I GATC 2 cut(s) 231, 424
LpnPI CCDG 9 cut(s) 30, 65, 108, 124, 141, 186, 309, 357, 426
MaeI CTAG 1 cut(s) 419
MaeII ACGT 2 cut(s) 57, 162
MalI GATC 2 cut(s) 233, 426
MbiI CCGCTC 1 cut(s) 245
MboI GATC 2 cut(s) 231, 424
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 3 cut(s) 104, 130, 277
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 4 cut(s) 85, 109, 398, 426
Mox20I TGGCCA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 239
MspI CCGG 2 cut(s) 52, 111
MvnI CGCG 3 cut(s) 393, 408, 410
NdeII GATC 2 cut(s) 231, 424
NlaIII CATG 2 cut(s) 268, 363
PfeI GAWTC 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 51
PleI GAGTC 1 cut(s) 146
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 2 cut(s) 58, 163
PspCI CACGTG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 3 cut(s) 12, 56, 338
RsaNI GTAC 3 cut(s) 11, 55, 337
SaqAI TTAA 1 cut(s) 353
Sau3AI GATC 2 cut(s) 231, 424
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 63
SetI ASST 7 cut(s) 60, 120, 165, 177, 306, 320, 376
Sse9I AATT 3 cut(s) 104, 130, 277
SsiI CCGC 2 cut(s) 243, 391
SspMI CTAG 1 cut(s) 419
TaiI ACGT 2 cut(s) 60, 165
TaqI TCGA 1 cut(s) 102
TasI AATT 3 cut(s) 104, 130, 277
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 1 cut(s) 445
TspDTI ATGAA 3 cut(s) 87, 281, 288
TspRI CASTG 1 cut(s) 445
XapI RAATTY 2 cut(s) 104, 130
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.