pycom06g01730

Agglutinin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0024643
Physical Location & Seq
Forward (+)
2116214 .. 2116672
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01730.1

Sequence Viewer

Length: 459 bp
ATGGCAGGAATCCTACCAAACCCTTTTGCATTGAAATCTAACAGCAACCACCGTTACTTATGCTGCGGAGCAGACGGGCTTTTCCAATTCACTGGACAGGAGCCTACCTCATTTTTCACGACGGAGAATGGACAAACCCCCGGAACCGTGCATGTCAAGTGCGCTGCAAACGGCAAATACTGGGTAAGGGCGCCGGATCAAACTGAACCGCCATATCCGATCACGTGCACCGCTGACACACCACACGAACCGATCGATGAAAAGTGCACTTTGTTCGAGTTTGAGATTGTCCAACAAAGTACCCCCACAGAAGTGGTCCTCCGAATTCGCCATGTGGAGACCGGTCGCTATCTAAGGCCAATCAATATCCACGGTTTAGAAGCTGTCCTCTGTGCAGTGGATACCAACCCTGACGCCACTAAAGTAGAGTATCTCTTTACGGCCGTTGGGCGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agglutinin Bet_v_1

Protein Analysis

153

Amino Acids

16.84

Weight (kDa)

5.47

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agglutinin PF07468 5 - 123 1.1e-06 Agglutinin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024643)

Species Orthologous Gene IDs
pyrus_communis pycom06g01630 pycom06g01730 pycom12486g00030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 3 cut(s) 66, 209, 231
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 324
AcvI CACGTG 1 cut(s) 225
AcyI GRCGYC 3 cut(s) 191, 414, 451
AfaI GTAC 1 cut(s) 301
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 2 cut(s) 230, 269
Alw26I GTCTC 1 cut(s) 332
Alw44I GTGCAC 2 cut(s) 226, 265
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 356, 441
ApaLI GTGCAC 2 cut(s) 226, 265
ApeKI GCWGC 2 cut(s) 63, 164
ApoI RAATTY 1 cut(s) 324
AsiGI ACCGGT 1 cut(s) 341
AspLEI GCGC 2 cut(s) 164, 193
AspS9I GGNCC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 2 cut(s) 230, 269
BanI GGYRCC 1 cut(s) 190
BbrPI CACGTG 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 230, 269
BbvI GCAGC 2 cut(s) 50, 151
BceAI ACGGC 3 cut(s) 187, 428, 456
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciVI GTATCC 1 cut(s) 394
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 332
BfoI RGCGCY 1 cut(s) 194
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 2 cut(s) 64, 165
BlsI GCNGC 2 cut(s) 65, 166
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 316
BmiI GGNNCC 3 cut(s) 102, 145, 192
BmrFI CCNGG 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 190
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 225
BsaHI GRCGYC 3 cut(s) 191, 414, 451
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 139, 370
BsaWI WCCGGW 1 cut(s) 341
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 97, 185
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 139, 370
BseNI ACTGG 2 cut(s) 97, 185
BseSI GKGCMC 2 cut(s) 230, 269
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 2 cut(s) 50, 151
BsgI GTGCAG 1 cut(s) 414
Bsh1285I CGRYCG 3 cut(s) 255, 346, 444
BshFI GGCC 2 cut(s) 358, 443
BshNI GGYRCC 1 cut(s) 190
BshTI ACCGGT 1 cut(s) 341
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 3 cut(s) 255, 346, 444
BsiHKAI GWGCWC 2 cut(s) 230, 269
BsiSI CCGG 3 cut(s) 141, 194, 342
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 2 cut(s) 358, 443
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 230, 269
Bsp143I GATC 3 cut(s) 196, 219, 252
BspACI CCGC 3 cut(s) 66, 209, 231
BspANI GGCC 2 cut(s) 358, 443
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 102, 145, 192
BspPI GGATC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 97, 185
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 139, 370
BssMI GATC 3 cut(s) 196, 219, 252
BssNI GRCGYC 3 cut(s) 191, 414, 451
Bst4CI ACNGT 3 cut(s) 53, 148, 374
BstACI GRCGYC 3 cut(s) 191, 414, 451
BstBAI YACGTR 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 353
BstDSI CCRYGG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 164, 193
BstKTI GATC 3 cut(s) 199, 222, 255
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 196, 219, 252
BstMCI CGRYCG 3 cut(s) 255, 346, 444
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 230, 269
BstV1I GCAGC 2 cut(s) 50, 151
BstXI CCANNNNNNTGG 2 cut(s) 92, 313
BstZI CGGCCG 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 358, 443
BsuTUI ATCGAT 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 2 cut(s) 90, 402
CfoI GCGC 2 cut(s) 164, 193
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 255
CseI GACGC 2 cut(s) 422, 440
Csp6I GTAC 1 cut(s) 300
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 2 cut(s) 152, 332
CviJI RGCY 5 cut(s) 79, 103, 358, 383, 443
CviKI_1 RGCY 5 cut(s) 79, 103, 358, 383, 443
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 353
DinI GGCGCC 1 cut(s) 192
DpnI GATC 3 cut(s) 198, 221, 254
DpnII GATC 3 cut(s) 196, 219, 252
EaeI YGGCCR 1 cut(s) 441
EagI CGGCCG 1 cut(s) 441
EclXI CGGCCG 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 316
Eco52I CGGCCG 1 cut(s) 441
Eco72I CACGTG 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
FaeI CATG 2 cut(s) 155, 335
FaiI YATR 4 cut(s) 61, 153, 214, 333
FatI CATG 2 cut(s) 151, 331
Fnu4HI GCNGC 2 cut(s) 64, 165
Fsp4HI GCNGC 2 cut(s) 64, 165
GlaI GCGC 2 cut(s) 163, 192
GluI GCNGC 2 cut(s) 64, 165
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 358, 443
HapII CCGG 3 cut(s) 141, 194, 342
HgaI GACGC 2 cut(s) 422, 440
HhaI GCGC 2 cut(s) 164, 193
Hin1I GRCGYC 3 cut(s) 191, 414, 451
Hin1II CATG 2 cut(s) 155, 335
Hin6I GCGC 2 cut(s) 162, 191
HinP1I GCGC 2 cut(s) 162, 191
HinfI GANTC 1 cut(s) 9
HpaII CCGG 3 cut(s) 141, 194, 342
Hpy166II GTNNAC 2 cut(s) 228, 267
Hpy188I TCNGA 2 cut(s) 219, 323
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 228, 267
Hpy99I CGWCG 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 53, 148, 374
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 6 cut(s) 29, 151, 167, 228, 267, 395
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 3 cut(s) 191, 414, 451
Hsp92II CATG 2 cut(s) 155, 335
HspAI GCGC 2 cut(s) 162, 191
KasI GGCGCC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 196, 219, 252
LmnI GCTCC 2 cut(s) 68, 100
LpnPI CCDG 7 cut(s) 78, 83, 154, 166, 207, 355, 423
Lsp1109I GCAGC 2 cut(s) 50, 151
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 53
MalI GATC 3 cut(s) 198, 221, 254
MboI GATC 3 cut(s) 196, 219, 252
MhlI GDGCHC 2 cut(s) 230, 269
MluCI AATT 2 cut(s) 86, 324
Mly113I GGCGCC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 118, 329, 398
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 3 cut(s) 141, 194, 342
MspR9I CCNGG 1 cut(s) 141
NarI GGCGCC 1 cut(s) 191
NciI CCSGG 1 cut(s) 141
NdeII GATC 3 cut(s) 196, 219, 252
NlaIII CATG 2 cut(s) 155, 335
NlaIV GGNNCC 3 cut(s) 102, 145, 192
NspI RCATGY 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 2 cut(s) 65, 166
Ple19I CGATCG 1 cut(s) 255
PluTI GGCGCC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 225
PmlI CACGTG 1 cut(s) 225
Ppu21I YACGTR 1 cut(s) 225
PspCI CACGTG 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 102, 145, 192
PspPI GGNCC 1 cut(s) 316
PvuI CGATCG 1 cut(s) 255
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 311
SatI GCNGC 2 cut(s) 64, 165
Sau3AI GATC 3 cut(s) 196, 219, 252
Sau96I GGNCC 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 2 cut(s) 230, 269
SetI ASST 3 cut(s) 110, 227, 385
SfoI GGCGCC 1 cut(s) 192
SinI GGWCC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 2 cut(s) 86, 324
SsiI CCGC 3 cut(s) 66, 209, 231
SspDI GGCGCC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 3 cut(s) 53, 148, 374
TaiI ACGT 1 cut(s) 227
TaqI TCGA 2 cut(s) 255, 276
TasI AATT 2 cut(s) 86, 324
TfiI GAWTC 1 cut(s) 9
TscAI CASTG 2 cut(s) 97, 402
TseI GCWGC 2 cut(s) 63, 164
TspDTI ATGAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 2 cut(s) 97, 402
VneI GTGCAC 2 cut(s) 226, 265
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.