Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0029295

Physical Location & Seq

Genomic Coordinates Forward (+)

2419353 .. 2420306

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATAGCTACTGATGTGGCTGCTCGTGGATTGGATATTCCAGACGTTGAAGTAGTGATTAACTATAATTTTCCTCTCACTACTGAGGATTGTGTCCACCGAATTGGGCGGACTGGATGGGCTGGAAAGAAGGGTGTTGCTCATACTTTTTTCACACATCGGACCAAGGGACTTGCGGGGGAGCTGGTCAATGTTCTCAGAGAAGCCAGCCAAATTGTGCCTGAAGCCTTGTTGAAATTTGGTGCTCATGTTAAGAAAAAGACACGCATTTGTTTCTCTTTCATCTCCCGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

9.62

Isoelectric Point (pI)

12.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	1 - 40	6.1e-13	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0029295)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g01940
rosa_laevigata	RLG00000002845

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	109, 176
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	50, 235
AluBI	AGCT	2 cut(s)	8, 184
AluI	AGCT	2 cut(s)	8, 184
Alw21I	GWGCWC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	1 cut(s)	111
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	122
BseMII	CTCAG	2 cut(s)	75, 211
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	109, 176
BspCNI	CTCAG	2 cut(s)	76, 210
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	2 cut(s)	84, 197
BstF5I	GGATG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	162
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	7 cut(s)	8, 20, 122, 184, 206, 210, 227
CviKI_1	RGCY	7 cut(s)	8, 20, 122, 184, 206, 210, 227
DdeI	CTNAG	2 cut(s)	84, 197
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	66, 144, 249
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	247
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	162, 200
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	45
HpyF3I	CTNAG	2 cut(s)	84, 197
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	6 cut(s)	54, 99, 108, 170, 220, 234
Lsp1109I	GCAGC	1 cut(s)	7
MaeII	ACGT	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	4 cut(s)	67, 102, 213, 236
MnlI	CCTC	2 cut(s)	79, 84
MseI	TTAA	2 cut(s)	60, 252
NlaIII	CATG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	60, 252
SatI	GCNGC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	3 cut(s)	10, 48, 186
SinI	GGWCC	1 cut(s)	162
Sse9I	AATT	4 cut(s)	67, 102, 213, 236
SsiI	CCGC	2 cut(s)	109, 176
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	48
TasI	AATT	4 cut(s)	67, 102, 213, 236
Tru1I	TTAA	2 cut(s)	60, 252
Tru9I	TTAA	2 cut(s)	60, 252
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.