Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0029295

Physical Location & Seq

Genomic Coordinates Forward (+)

40593470 .. 40605761

Gene Structure 12292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGAGAAAAGAACGTAGGCGGTTAAAAATTGAGGAGGGGCGACGTGGAATTACCGAAAAGGGATTGACCTCGACCTCTTCTTCTTCAAAGGGATTGGGGTCTTGGTGCCGATTCATGATTGCTACTGATGTGGCTGCTCGAGGATTAGATATCCCAGACGTTGAGGTAGTGATTAACTATAGTTTTCCACTCACAACCGAGGATTATGTCCACAGAATTGGGCGCACTGGACGGGCCGGTAAGAAGGGTGTCGCTCATACCTTTTTCACGCATCACAACAAGGGACATGCTGGGGAGCTGGTCAATGTTCTCAGAGAAGCTGGGCAAAATGTGCCAGCTGACTTGTTGAAGTTTGGCACTCATGTAAAGAAAAACGAATCCAAACTTTATGGGGCTCACTTCAGAGAAATTTCTGCCGATGCTCCAAAGGCTAAAAAGATCACATTCGCTGACTCTAATGATGAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

9.71

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	37 - 81	9.2e-17	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0029295)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g01940
rosa_laevigata	RLG00000002845

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AciI	CCGC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	388
AgsI	TTSAA	2 cut(s)	90, 352
AjiI	CACGTC	1 cut(s)	47
AluBI	AGCT	3 cut(s)	301, 323, 341
AluI	AGCT	3 cut(s)	301, 323, 341
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	124
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	110
BmsI	GCATC	2 cut(s)	283, 412
BsaJI	CCNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	124
BseYI	CCCAGC	2 cut(s)	293, 323
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	441
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	327
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstMWI	GCNNNNNNNGC	2 cut(s)	334, 431
BstNSI	RCATGY	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	339
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	237
CviAII	CATG	3 cut(s)	118, 290, 365
CviJI	RGCY	7 cut(s)	137, 239, 301, 323, 341, 398, 434
CviKI_1	RGCY	7 cut(s)	137, 239, 301, 323, 341, 398, 434
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	3 cut(s)	121, 293, 368
FaiI	YATR	7 cut(s)	119, 183, 210, 261, 291, 366, 393
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	117, 289, 364
Fnu4HI	GCNGC	1 cut(s)	138
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	2 cut(s)	297, 327
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	3 cut(s)	121, 293, 368
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	114, 380, 455
HpaII	CCGG	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	317, 407
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	3 cut(s)	16, 46, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	334, 431
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	3 cut(s)	16, 46, 162
Hsp92II	CATG	3 cut(s)	121, 293, 368
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	2 cut(s)	298, 430
LpnPI	CCDG	7 cut(s)	171, 216, 253, 279, 287, 309, 351
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	2 cut(s)	283, 412
MaeII	ACGT	3 cut(s)	16, 46, 162
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MboII	GAAGA	4 cut(s)	16, 72, 75, 78
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	4 cut(s)	30, 51, 219, 411
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	7 cut(s)	28, 31, 82, 88, 137, 160, 196
MseI	TTAA	2 cut(s)	26, 177
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	334, 431
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	3 cut(s)	121, 293, 368
NlaIV	GGNNCC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	141
PagI	TCATGA	1 cut(s)	117
PfeI	GAWTC	2 cut(s)	114, 380
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PspFI	CCCAGC	2 cut(s)	293, 323
PspN4I	GGNNCC	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	237
PspXI	VCTCGAGB	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	26, 177
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	1 cut(s)	237
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	283, 412
SfcI	CTRYAG	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	30, 51, 219, 411
SsiI	CCGC	1 cut(s)	22
TaiI	ACGT	3 cut(s)	19, 49, 165
TaqI	TCGA	2 cut(s)	74, 142
TasI	AATT	4 cut(s)	30, 51, 219, 411
TfiI	GAWTC	2 cut(s)	114, 380
Tru1I	TTAA	2 cut(s)	26, 177
Tru9I	TTAA	2 cut(s)	26, 177
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	17, 106
TspRI	CASTG	1 cut(s)	235
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.