pycom06g06250

Involved in protein precursor import into chloroplasts. May be part of an intermediate translocation complex acting as a protein-conducting channel at the inner envelope

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
9665016 .. 9665760
745 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06250.1

Sequence Viewer

Length: 393 bp
ATGGATAAATCTAAGCGAATCTTTCTTAAATCTAAGCAATCTTTTCATAGGAGTTTGCCTCTGATCCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGGTTTTTTGAACCGATTTTAAAGGAACTCAAAAAAAAAATTAAAAAATTGCAAAAGAAATGTTTTATAATTCTAGGAAGTTTTAAAGAACAAACAAAATTGTTTCTAAATGTCTCAAAAAAACCAAACAAATGGATCATTAAAAACATTCTATTTATAAAAGAAATAATAAAAGAACTCTTAAAAATAAACCCAATTATATTATTTGGATTGAGAGAAATAGAAGTATATGAATTGAGTGAAATTAAAAAAGATTCAATAATCAGTAATCGGATGATTCAGTAA

Protein Analysis

131

Amino Acids

15.59

Weight (kDa)

10.17

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020979)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00650
pyrus_communis pycom06g06250
rosa_chinensis RchiOBHm_Chr6g0260411 RchiOBHm_CPg0502011
rosa_wichuraiana Rw5G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 176, 266
AclWI GGATC 3 cut(s) 58, 84, 251
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 119, 366
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 3 cut(s) 58, 84, 251
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 182
BplI GAGNNNNNCTC 2 cut(s) 43, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 226
Bsp143I GATC 3 cut(s) 63, 76, 243
BspPI GGATC 3 cut(s) 58, 84, 251
BssMI GATC 3 cut(s) 63, 76, 243
BstDEI CTNAG 2 cut(s) 12, 33
BstF5I GGATG 1 cut(s) 387
BstKTI GATC 3 cut(s) 66, 79, 246
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 63, 76, 243
BstXI CCANNNNNNTGG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 387
CviAII CATG 1 cut(s) 97
DdeI CTNAG 2 cut(s) 12, 33
DpnI GATC 3 cut(s) 65, 78, 245
DpnII GATC 3 cut(s) 63, 76, 243
DraI TTTAAA 2 cut(s) 129, 193
FaeI CATG 1 cut(s) 100
FaiI YATR 8 cut(s) 48, 90, 98, 176, 266, 308, 337, 339
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 1 cut(s) 96
FspBI CTAG 1 cut(s) 182
Hin1II CATG 1 cut(s) 100
HinfI GANTC 3 cut(s) 18, 362, 385
Hpy188I TCNGA 2 cut(s) 63, 381
HpyCH4V TGCA 1 cut(s) 160
HpyF3I CTNAG 2 cut(s) 12, 33
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 3 cut(s) 63, 76, 243
MaeI CTAG 1 cut(s) 182
MalI GATC 3 cut(s) 65, 78, 245
MboI GATC 3 cut(s) 63, 76, 243
MluCI AATT 9 cut(s) 81, 105, 147, 155, 177, 206, 303, 341, 351
MnlI CCTC 1 cut(s) 69
MseI TTAA 8 cut(s) 27, 104, 128, 150, 192, 249, 290, 354
NdeII GATC 3 cut(s) 63, 76, 243
NlaIII CATG 1 cut(s) 100
PfeI GAWTC 3 cut(s) 18, 362, 385
PsiI TTATAA 2 cut(s) 176, 266
SaqAI TTAA 8 cut(s) 27, 104, 128, 150, 192, 249, 290, 354
Sau3AI GATC 3 cut(s) 63, 76, 243
SetI ASST 1 cut(s) 113
SgeI CNNG 3 cut(s) 84, 109, 194
Sse9I AATT 9 cut(s) 81, 105, 147, 155, 177, 206, 303, 341, 351
SspMI CTAG 1 cut(s) 182
TaqI TCGA 1 cut(s) 79
TasI AATT 9 cut(s) 81, 105, 147, 155, 177, 206, 303, 341, 351
TfiI GAWTC 3 cut(s) 18, 362, 385
Tru1I TTAA 8 cut(s) 27, 104, 128, 150, 192, 249, 290, 354
Tru9I TTAA 8 cut(s) 27, 104, 128, 150, 192, 249, 290, 354
TspDTI ATGAA 2 cut(s) 35, 354
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.