pycom06g07470

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
12112192 .. 12112395
204 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 204 bp
ATGATCAGTCAGATATCGAGTTATCATCGCAACGATAGAACGAAATTTGAAGGAGCCAAGCAAACTGAAAAAACTGGATTCTACTCCAGAAATTCATGGTATGTCTCCAGAGAAGCTCCAGAGGAGGGATCTCGTGTGACCGACCGAGTTACCGGCGTTTCCCTACGAGAAGTTCCACAGGGACCAAACCCACTTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.68

Weight (kDa)

9.3

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63245
prunus_persica Prupe.5G095200_v2.0.a1
pyrus_communis pycom06g07470
rosa_laevigata RLG00000003853
rosa_roxburghii Rroxscaffold_3G00257580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 2 cut(s) 44, 91
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 44, 91
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 132
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 2 cut(s) 55, 183
BpmI CTGGAG 3 cut(s) 70, 91, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 145
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 195
Bsp143I GATC 2 cut(s) 3, 128
BspLI GGNNCC 2 cut(s) 55, 183
BspPI GGATC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 152
BssMI GATC 2 cut(s) 3, 128
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
BstKTI GATC 2 cut(s) 6, 131
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 2 cut(s) 3, 128
BstMCI CGRYCG 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 1 cut(s) 96
CviJI RGCY 2 cut(s) 56, 116
CviKI_1 RGCY 2 cut(s) 56, 116
DpnI GATC 2 cut(s) 5, 130
DpnII GATC 2 cut(s) 3, 128
Eco32I GATATC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 15
FaeI CATG 1 cut(s) 99
FaiI YATR 2 cut(s) 97, 102
FaqI GGGAC 1 cut(s) 195
FatI CATG 1 cut(s) 95
FbaI TGATCA 1 cut(s) 3
GsuI CTGGAG 3 cut(s) 70, 91, 102
HapII CCGG 1 cut(s) 153
Hin1II CATG 1 cut(s) 99
HinfI GANTC 1 cut(s) 78
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 3 cut(s) 87, 108, 119
HpyAV CCTTC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 128
LmnI GCTCC 2 cut(s) 53, 121
LpnPI CCDG 6 cut(s) 60, 100, 121, 132, 164, 166
MaeIII GTNAC 2 cut(s) 136, 148
MalI GATC 2 cut(s) 5, 130
MboI GATC 2 cut(s) 3, 128
MflI RGATCY 1 cut(s) 128
MluCI AATT 2 cut(s) 44, 91
MnlI CCTC 2 cut(s) 115, 118
MspI CCGG 1 cut(s) 153
NdeII GATC 2 cut(s) 3, 128
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 55, 183
NmuCI GTSAC 1 cut(s) 136
PfeI GAWTC 1 cut(s) 78
PspN4I GGNNCC 2 cut(s) 55, 183
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 128
Sau3AI GATC 2 cut(s) 3, 128
Sau96I GGNCC 1 cut(s) 182
SetI ASST 1 cut(s) 118
SinI GGWCC 1 cut(s) 182
Sse9I AATT 2 cut(s) 44, 91
TaqI TCGA 1 cut(s) 17
TaqII GACCGA 2 cut(s) 155, 159
TasI AATT 2 cut(s) 44, 91
TfiI GAWTC 1 cut(s) 78
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 2 cut(s) 44, 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.