Rroxscaffold_3G00257580

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
51910739 .. 51910999
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257580.1

Sequence Viewer

Length: 261 bp
ATGGGATTTCAGAATCTCAGACTTCCATTTGTGATGTTCATGATCATGCTCATGATCAGCCAGCAATCAAATTCTCGTCAGCTCCACATAAAGATAAGTGAAGGAGAGAAGCAAACAGAGAAAACTGAATCCAATTCCCAGGTTTCATGGCATTTCTCTGCAAAAGCTCCAGAGGGAGCCAACAGAGATGGGGTTGACCCGGTGGCTAGTAATGTTTCTCTACGAGTAGTTCCAGCAGGACCAAACCCACTTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.56

Weight (kDa)

8.25

Isoelectric Point (pI)

60.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63245
prunus_persica Prupe.5G095200_v2.0.a1
pyrus_communis pycom06g07470
rosa_laevigata RLG00000003853
rosa_roxburghii Rroxscaffold_3G00257580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 70
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 82, 167
AluI AGCT 2 cut(s) 82, 167
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 239
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 140
BclI TGATCA 2 cut(s) 42, 54
BcnI CCSGG 1 cut(s) 200
BfaI CTAG 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 140, 200
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 140, 200
BpmI CTGGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 200
Bsp143I GATC 2 cut(s) 42, 54
BspCNI CTCAG 1 cut(s) 30
BspHI TCATGA 2 cut(s) 39, 51
BspLI GGNNCC 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 42, 54
Bst2UI CCWGG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 17
BstKTI GATC 2 cut(s) 45, 57
BstMBI GATC 2 cut(s) 42, 54
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 198
Cac8I GCNNGC 1 cut(s) 62
CciI TCATGA 2 cut(s) 39, 51
Cfr13I GGNCC 1 cut(s) 239
CviAII CATG 4 cut(s) 40, 46, 52, 147
CviJI RGCY 5 cut(s) 60, 82, 167, 179, 206
CviKI_1 RGCY 5 cut(s) 60, 82, 167, 179, 206
DdeI CTNAG 1 cut(s) 17
DpnI GATC 2 cut(s) 44, 56
DpnII GATC 2 cut(s) 42, 54
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 43, 49, 55, 150
FaiI YATR 5 cut(s) 41, 47, 53, 89, 148
FatI CATG 4 cut(s) 39, 45, 51, 146
FbaI TGATCA 2 cut(s) 42, 54
FspBI CTAG 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 153
HapII CCGG 1 cut(s) 200
Hin1II CATG 4 cut(s) 43, 49, 55, 150
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 2 cut(s) 13, 128
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 12, 20
Hpy188III TCNNGA 3 cut(s) 40, 52, 170
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 4 cut(s) 43, 49, 55, 150
Ksp22I TGATCA 2 cut(s) 42, 54
Kzo9I GATC 2 cut(s) 42, 54
LmnI GCTCC 3 cut(s) 87, 172, 176
LpnPI CCDG 7 cut(s) 74, 125, 152, 183, 213, 222, 246
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 44, 56
MboI GATC 2 cut(s) 42, 54
MluCI AATT 2 cut(s) 70, 133
MnlI CCTC 1 cut(s) 166
MslI CAYNNNNRTG 2 cut(s) 44, 50
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 140, 200
MvaI CCWGG 1 cut(s) 140
NciI CCSGG 1 cut(s) 200
NdeII GATC 2 cut(s) 42, 54
NlaIII CATG 4 cut(s) 43, 49, 55, 150
NlaIV GGNNCC 1 cut(s) 178
PagI TCATGA 2 cut(s) 39, 51
PfeI GAWTC 2 cut(s) 13, 128
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 239
RseI CAYNNNNRTG 2 cut(s) 44, 50
Sau3AI GATC 2 cut(s) 42, 54
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 140, 200
SetI ASST 3 cut(s) 84, 144, 169
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 2 cut(s) 44, 50
Sse9I AATT 2 cut(s) 70, 133
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 138, 198
TasI AATT 2 cut(s) 70, 133
TfiI GAWTC 2 cut(s) 13, 128
TspDTI ATGAA 2 cut(s) 28, 135
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 70
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.