RLG00000003853

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
53557532 .. 53558371
840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003853

Sequence Viewer

Length: 345 bp
ATGTTCATGATCATGCTCATGATCAGTCAGCAATCAGATTCTCGTCAGCTCCACATAAAGATAAGTGAAGGAGAGAAGCAAACAGAGAAAACTGAATCCAATTCCCAGGTTTCATGGCATTTCTCTGCAAAAGCTCCAGAGGGAGCCAACAGAGATGGGGTTGACCCGGTGAATAAGGAGGTTCTCACTTTCTTTTTGAAGAAAAGGACATCCTCTTTAGATGGGAACTCCTATCTATTATATCTTAGACAATTAGAGATATCAAAGAGTTCAAAATCAGAAAAAGTTTCAGAACCTACAGAGAAAGCTTTTGCTGCTGGAAAGGTTCAAGGCACAAAAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

9.4

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63245
prunus_persica Prupe.5G095200_v2.0.a1
pyrus_communis pycom06g07470
rosa_laevigata RLG00000003853
rosa_roxburghii Rroxscaffold_3G00257580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 199, 273, 329
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 49, 134, 308
AluI AGCT 3 cut(s) 49, 134, 308
ApeKI GCWGC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 181
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 149, 215
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 2 cut(s) 9, 21
BcnI CCSGG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 107, 167
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 107, 167
BpmI CTGGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 301
BsiSI CCGG 1 cut(s) 167
Bsp143I GATC 2 cut(s) 9, 21
BspHI TCATGA 2 cut(s) 6, 18
BspLI GGNNCC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 9, 21
Bst2UI CCWGG 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 209
BstKTI GATC 2 cut(s) 12, 24
BstMBI GATC 2 cut(s) 9, 21
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 105, 165
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 209
CciI TCATGA 2 cut(s) 6, 18
CviAII CATG 4 cut(s) 7, 13, 19, 114
CviJI RGCY 4 cut(s) 49, 134, 146, 308
CviKI_1 RGCY 4 cut(s) 49, 134, 146, 308
DdeI CTNAG 1 cut(s) 245
DpnI GATC 2 cut(s) 11, 23
DpnII GATC 2 cut(s) 9, 21
Eco32I GATATC 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 105
EcoRV GATATC 1 cut(s) 261
FaeI CATG 4 cut(s) 10, 16, 22, 117
FaiI YATR 6 cut(s) 8, 14, 20, 56, 115, 241
FatI CATG 4 cut(s) 6, 12, 18, 113
FbaI TGATCA 2 cut(s) 9, 21
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 120
HapII CCGG 1 cut(s) 167
Hin1II CATG 4 cut(s) 10, 16, 22, 117
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 2 cut(s) 38, 95
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 37, 280, 292
Hpy188III TCNNGA 3 cut(s) 7, 19, 137
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 4 cut(s) 10, 16, 22, 117
Ksp22I TGATCA 2 cut(s) 9, 21
Kzo9I GATC 2 cut(s) 9, 21
LmnI GCTCC 3 cut(s) 54, 139, 143
LpnPI CCDG 5 cut(s) 92, 119, 150, 180, 303
Lsp1109I GCAGC 1 cut(s) 301
MalI GATC 2 cut(s) 11, 23
MboI GATC 2 cut(s) 9, 21
MboII GAAGA 1 cut(s) 211
MluCI AATT 2 cut(s) 100, 251
MnlI CCTC 3 cut(s) 133, 172, 223
MslI CAYNNNNRTG 2 cut(s) 11, 17
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 2 cut(s) 107, 167
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 167
NdeII GATC 2 cut(s) 9, 21
NlaIII CATG 4 cut(s) 10, 16, 22, 117
NlaIV GGNNCC 1 cut(s) 145
PagI TCATGA 2 cut(s) 6, 18
PfeI GAWTC 2 cut(s) 38, 95
PkrI GCNGC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 11, 17
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 2 cut(s) 9, 21
ScrFI CCNGG 2 cut(s) 107, 167
SetI ASST 7 cut(s) 51, 111, 136, 183, 298, 310, 327
SfcI CTRYAG 1 cut(s) 297
SmiMI CAYNNNNRTG 2 cut(s) 11, 17
Sse9I AATT 2 cut(s) 100, 251
StyD4I CCNGG 2 cut(s) 105, 165
TasI AATT 2 cut(s) 100, 251
TfiI GAWTC 2 cut(s) 38, 95
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.