pycom06g10990

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029299
Physical Location & Seq
Reverse (-)
16181229 .. 16184257
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g10990.5

Sequence Viewer

Length: 972 bp
ATGATTACGCATCAGAAACAACCAATGAAAGCCCTACGGCGGAGTCACACTTCTTCTAATCCACCTCCACCGTCAAATTCCACATCTTCACCGTCACCGTCGTCAAATTCAACATCTTCACCGTCACCGTCGTCAAATTCCACATCTTCACCGTCGTCGTCGTCATGGATTCATTTGCGATCGGTTTTGTTAGTAGTTGCTTCCTCGTCTTCCACACCAGTTTCCACTGATCGGGGCAGTCTTAAATCACCTTGGTCCCGTAGGAGAAAAAAACATGCCCTTCTACCCAAACAATGGAAAAGTTTATTTACACCAGATGGGAAACTCACTGATGGGGGTCTCAAGTTTTTAAAGAAAGTTCGCAGCGGAGGTGTTGATCCAAGTATTCGAGCTGAAGTGTGGCCGTTTCTTCTTGGAGTCTATGATGTGAACAGTTCCAAGGAAGAAAGAGACTCTGTCAAAAAACAGAATAGAAAAGAATATGAACACTTACGGAGACAGTGCTGGAGAATTTTAACACAAAGTGATAAGAGCTTGAAGTTGAAGGAAACTTCTGGTAACAGTAGCACTGAGGGCAGCGGGGATTTTAGTCAAGTTTTAGATTGTTTTGACCAAGGGGATGTTACAAGTGCCAGGAAATCCATTTCAACTGAGTGTGGAAACCAATTACCCAAGGATTCAGATAACCCTATAGGCAATCAAGCTGTCCAGACTTCTGAATCACTTGAAGCAGATGGTGAGAAAAGTGGAGTAACCTGTGAAGATCCCTATGCTGCCGATACGGAATCAACTGATTCTGATTCCTCTGAAGAATCTGATATCACTCGACCATTACTATCCACTGATGTTACTGAAGAAAATTATGTTGATGACAAGGCTAAGGAGAGCTCTTCTCCCTCCAATATAGACAACAAGCCCAAAGTCCACTCAGCAGAAGATTTTGCCACATGGCAGAAGATCGATCCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 map04137
Pfam Domains
Protein Families
RabGAP-TBC

Protein Analysis

324

Amino Acids

35.29

Weight (kDa)

6.34

Isoelectric Point (pI)

67.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029299)

Species Orthologous Gene IDs
pyrus_communis pycom06g10990 pycom14g11100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AciI CCGC 4 cut(s) 40, 366, 579, 965
AclWI GGATC 3 cut(s) 371, 758, 956
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 4 cut(s) 76, 106, 136, 510
AcuI CTGAAG 3 cut(s) 414, 828, 873
AdeI CACNNNGTG 1 cut(s) 524
AfiI CCNNNNNNNGG 3 cut(s) 39, 231, 294
AgsI TTSAA 5 cut(s) 111, 538, 544, 648, 728
AjnI CCWGG 1 cut(s) 632
AluBI AGCT 4 cut(s) 392, 534, 704, 888
AluI AGCT 4 cut(s) 392, 534, 704, 888
Alw21I GWGCWC 1 cut(s) 890
Alw26I GTCTC 3 cut(s) 344, 444, 490
AlwI GGATC 3 cut(s) 371, 758, 956
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 363, 576, 773
ApoI RAATTY 4 cut(s) 76, 106, 136, 510
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 7 cut(s) 81, 87, 111, 117, 141, 240, 749
AvaII GGWCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 890
BbvI GCAGC 3 cut(s) 375, 588, 760
BccI CCATC 3 cut(s) 311, 326, 728
BceAI ACGGC 2 cut(s) 53, 388
BciT130I CCWGG 1 cut(s) 634
BcoDI GTCTC 3 cut(s) 344, 444, 490
BfmI CTRYAG 1 cut(s) 690
BisI GCNGC 3 cut(s) 364, 577, 774
BlsI GCNGC 3 cut(s) 365, 578, 775
Bme1390I CCNGG 1 cut(s) 634
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 634
BmsI GCATC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 877, 909
BpmI CTGGAG 1 cut(s) 526
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 960
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 4 cut(s) 251, 438, 613, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 231, 294
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 634
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 4 cut(s) 251, 438, 613, 672
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 3 cut(s) 39, 231, 294
BseMII CTCAG 3 cut(s) 561, 642, 942
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 3 cut(s) 375, 588, 760
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 403
BshVI ATCGAT 1 cut(s) 960
BsiEI CGRYCG 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 890
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 3 cut(s) 39, 231, 294
BsmAI GTCTC 3 cut(s) 344, 444, 490
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 403
Bso31I GGTCTC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 890
Bsp143I GATC 6 cut(s) 179, 229, 376, 763, 957, 961
BspACI CCGC 4 cut(s) 40, 366, 579, 965
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 3 cut(s) 562, 643, 941
BspDI ATCGAT 1 cut(s) 960
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 3 cut(s) 371, 758, 956
BspQI GCTCTTC 1 cut(s) 895
BspTNI GGTCTC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 251, 438, 613, 672
BssMI GATC 6 cut(s) 179, 229, 376, 763, 957, 961
BssT1I CCWWGG 4 cut(s) 251, 438, 613, 672
Bst2UI CCWGG 1 cut(s) 634
Bst4CI ACNGT 9 cut(s) 72, 93, 99, 123, 129, 153, 434, 501, 563
Bst6I CTCTTC 1 cut(s) 895
BstDEI CTNAG 4 cut(s) 570, 651, 879, 928
BstF5I GGATG 1 cut(s) 625
BstKTI GATC 6 cut(s) 182, 232, 379, 766, 960, 964
BstMAI GTCTC 3 cut(s) 344, 444, 490
BstMBI GATC 6 cut(s) 179, 229, 376, 763, 957, 961
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 1 cut(s) 634
BstNSI RCATGY 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 375, 588, 760
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 1 cut(s) 403
BsuTUI ATCGAT 1 cut(s) 960
BtsCI GGATG 1 cut(s) 625
BtsIMutI CAGTG 5 cut(s) 225, 327, 506, 567, 840
Cfr13I GGNCC 1 cut(s) 255
ClaI ATCGAT 1 cut(s) 960
CviAII CATG 3 cut(s) 165, 275, 948
CviJI RGCY 8 cut(s) 32, 392, 403, 534, 704, 878, 888, 916
CviKI_1 RGCY 8 cut(s) 32, 392, 403, 534, 704, 878, 888, 916
DdeI CTNAG 4 cut(s) 570, 651, 879, 928
DpnI GATC 6 cut(s) 181, 231, 378, 765, 959, 963
DpnII GATC 6 cut(s) 179, 229, 376, 763, 957, 961
DraI TTTAAA 1 cut(s) 351
DraIII CACNNNGTG 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 895
EarI CTCTTC 1 cut(s) 895
EciI GGCGGA 2 cut(s) 55, 954
Ecl136II GAGCTC 1 cut(s) 888
Eco130I CCWWGG 4 cut(s) 251, 438, 613, 672
Eco24I GRGCYC 1 cut(s) 890
Eco31I GGTCTC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 888
Eco57I CTGAAG 3 cut(s) 414, 828, 873
EcoICRI GAGCTC 1 cut(s) 888
EcoRII CCWGG 1 cut(s) 632
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 4 cut(s) 251, 438, 613, 672
EcoT38I GRGCYC 1 cut(s) 890
ErhI CCWWGG 4 cut(s) 251, 438, 613, 672
FaeI CATG 3 cut(s) 168, 278, 951
FaiI YATR 9 cut(s) 166, 276, 423, 483, 692, 771, 864, 905, 949
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 164, 274, 947
FauI CCCGC 1 cut(s) 572
Fnu4HI GCNGC 3 cut(s) 364, 577, 774
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 1 cut(s) 890
Fsp4HI GCNGC 3 cut(s) 364, 577, 774
GluI GCNGC 3 cut(s) 364, 577, 774
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 1 cut(s) 403
Hin1II CATG 3 cut(s) 168, 278, 951
HphI GGTGA 7 cut(s) 81, 87, 111, 117, 141, 240, 749
Hpy166II GTNNAC 2 cut(s) 430, 925
Hpy188I TCNGA 6 cut(s) 15, 682, 718, 799, 808, 817
Hpy188III TCNNGA 1 cut(s) 709
Hpy8I GTNNAC 2 cut(s) 430, 925
Hpy99I CGWCG 5 cut(s) 103, 133, 157, 160, 163
HpyAV CCTTC 2 cut(s) 290, 538
HpyCH4III ACNGT 9 cut(s) 72, 93, 99, 123, 129, 153, 434, 501, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 4 cut(s) 570, 651, 879, 928
Hsp92II CATG 3 cut(s) 168, 278, 951
Kzo9I GATC 6 cut(s) 179, 229, 376, 763, 957, 961
LguI GCTCTTC 1 cut(s) 895
LpnPI CCDG 8 cut(s) 231, 327, 490, 540, 619, 646, 722, 769
Lsp1109I GCAGC 3 cut(s) 375, 588, 760
LweI GCATC 1 cut(s) 19
MaeIII GTNAC 7 cut(s) 44, 93, 123, 557, 622, 751, 847
MalI GATC 6 cut(s) 181, 231, 378, 765, 959, 963
MboI GATC 6 cut(s) 179, 229, 376, 763, 957, 961
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 1 cut(s) 890
MluCI AATT 6 cut(s) 76, 106, 136, 510, 665, 859
MlyI GAGTC 3 cut(s) 52, 426, 446
MnlI CCTC 6 cut(s) 75, 214, 362, 565, 814, 907
MseI TTAA 3 cut(s) 243, 350, 515
MspA1I CMGCKG 2 cut(s) 366, 579
MspR9I CCNGG 1 cut(s) 634
MvaI CCWGG 1 cut(s) 634
MwoI GCNNNNNNNGC 1 cut(s) 573
NdeII GATC 6 cut(s) 179, 229, 376, 763, 957, 961
NlaIII CATG 3 cut(s) 168, 278, 951
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 3 cut(s) 44, 93, 123
NspI RCATGY 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 895
PfeI GAWTC 7 cut(s) 169, 677, 719, 785, 794, 800, 812
PflFI GACNNNGTC 1 cut(s) 455
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 3 cut(s) 365, 578, 775
Ple19I CGATCG 1 cut(s) 182
PleI GAGTC 3 cut(s) 51, 425, 446
PpsI GAGTC 3 cut(s) 51, 425, 446
Psp124BI GAGCTC 1 cut(s) 890
Psp6I CCWGG 1 cut(s) 632
PspGI CCWGG 1 cut(s) 632
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 763
PsyI GACNNNGTC 1 cut(s) 455
PvuI CGATCG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 890
SapI GCTCTTC 1 cut(s) 895
SaqAI TTAA 3 cut(s) 243, 350, 515
SatI GCNGC 3 cut(s) 364, 577, 774
Sau3AI GATC 6 cut(s) 179, 229, 376, 763, 957, 961
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 3 cut(s) 52, 426, 446
ScrFI CCNGG 1 cut(s) 634
SduI GDGCHC 1 cut(s) 890
SetI ASST 8 cut(s) 67, 253, 373, 394, 536, 706, 758, 890
SfaNI GCATC 1 cut(s) 19
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 6 cut(s) 76, 106, 136, 510, 665, 859
SsiI CCGC 4 cut(s) 40, 366, 579, 965
SstI GAGCTC 1 cut(s) 890
StyD4I CCNGG 1 cut(s) 632
StyI CCWWGG 4 cut(s) 251, 438, 613, 672
TaaI ACNGT 9 cut(s) 72, 93, 99, 123, 129, 153, 434, 501, 563
TaqI TCGA 3 cut(s) 388, 826, 960
TasI AATT 6 cut(s) 76, 106, 136, 510, 665, 859
TfiI GAWTC 7 cut(s) 169, 677, 719, 785, 794, 800, 812
Tru1I TTAA 3 cut(s) 243, 350, 515
Tru9I TTAA 3 cut(s) 243, 350, 515
TscAI CASTG 5 cut(s) 232, 334, 506, 574, 847
TseFI GTSAC 3 cut(s) 44, 93, 123
TseI GCWGC 3 cut(s) 363, 576, 773
Tsp45I GTSAC 3 cut(s) 44, 93, 123
TspDTI ATGAA 3 cut(s) 41, 161, 498
TspGWI ACGGA 2 cut(s) 508, 797
TspRI CASTG 5 cut(s) 232, 334, 506, 574, 847
Tth111I GACNNNGTC 1 cut(s) 455
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 4 cut(s) 76, 106, 136, 510
XceI RCATGY 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.