Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0027968

Physical Location & Seq

Genomic Coordinates Reverse (-)

18279398 .. 18280253

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTCTTGCTTCTTTCAAAGTACAAAATGAAGAGCGTTCCTGTCGTTGATTTGGGTGATGGAAAGATTGATAATATCATCACACAATCTGCTGTGATTCACATGTTAGCGGAATGCGCTGGACTTCAGTGGTTCGAGAGCTGGGGAACCAAGAAACTATCCGAGCTTGGTCTTCCCATGATGACTGCTAATCGCATTGTCAAGGTGTACGAGGATGAACCAGTGCTGCAAGCGTTTAAGCTGATGAGGAAAAAGAGGGTTGGAGGGGTACCTGTGATTGAAAACGGCAGTAGCAAGGCAGTAGGTAATATAAGCCTAAGAGATGTCCAGTTCTTGCTTACTGCACCAGAAATTTACCATGATTACAGATCCATCACGGCGAAGAACTTCCTGACAGCAGTTGAAAGCAAGCATCATGAAGTCTACCCAACGTTGAGTACCATGGTTACGTGCAAAGGGGATGACACAGTTAAGGATTTAATCTTGATGCTGGACTCCAAAAAGATCCACAGGGTATATGTTGTGGACGATGATGGGAATCTGGAAGGAGTCATTACCCTCAGGGACATCATCTCAAGGCTAGTTCACGAACCCCGTGGCTACTTTGGTGACTTTTTTGACGGTGTTCTACCGCTGCCCCAAAACAGCAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

219

Amino Acids

24.48

Weight (kDa)

7.02

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	65 - 109	3.2e-09	CBS domain
CBS	PF00571	148 - 195	1.6e-11	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027968)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08190
pyrus_communis	pycom06g13250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	110, 632
AclI	AACGTT	1 cut(s)	431
AclWI	GGATC	2 cut(s)	363, 499
AcsI	RAATTY	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	4 cut(s)	23, 209, 270, 439
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	3 cut(s)	18, 281, 404
AluBI	AGCT	3 cut(s)	141, 166, 241
AluI	AGCT	3 cut(s)	141, 166, 241
AlwI	GGATC	2 cut(s)	363, 499
ApeKI	GCWGC	2 cut(s)	226, 634
ApoI	RAATTY	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	386
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	68, 620
AxyI	CCTNAGG	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	213, 621
BccI	CCATC	3 cut(s)	53, 380, 527
BceAI	ACGGC	2 cut(s)	301, 393
BfaI	CTAG	1 cut(s)	581
BisI	GCNGC	2 cut(s)	227, 635
BlsI	GCNGC	2 cut(s)	228, 636
BmiI	GGNNCC	2 cut(s)	148, 270
BmsI	GCATC	2 cut(s)	421, 477
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	450
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	2 cut(s)	441, 595
Bse1I	ACTGG	2 cut(s)	221, 328
Bse21I	CCTNAGG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	441, 595
BseGI	GGATG	2 cut(s)	220, 466
BseJI	GATNNNNATC	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	574
BseNI	ACTGG	2 cut(s)	221, 328
BseXI	GCAGC	2 cut(s)	213, 621
BseYI	CCCAGC	1 cut(s)	141
BsgI	GTGCAG	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	578
BsmI	GAATGC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	368, 504
Bsp19I	CCATGG	1 cut(s)	441
BspACI	CCGC	2 cut(s)	110, 632
BspCNI	CTCAG	1 cut(s)	573
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	148, 270
BspPI	GGATC	2 cut(s)	363, 499
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	221, 328
BssECI	CCNNGG	2 cut(s)	441, 595
BssMI	GATC	2 cut(s)	368, 504
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	469, 623
Bst6I	CTCTTC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	231, 410
BstDEI	CTNAG	2 cut(s)	317, 560
BstDSI	CCRYGG	2 cut(s)	441, 595
BstF5I	GGATG	2 cut(s)	220, 466
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	2 cut(s)	371, 507
BstMBI	GATC	2 cut(s)	368, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	213, 621
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	2 cut(s)	368, 504
BstYI	RGATCY	2 cut(s)	368, 504
Bsu36I	CCTNAGG	1 cut(s)	560
BtgI	CCRYGG	2 cut(s)	441, 595
BtsCI	GGATG	2 cut(s)	220, 466
BtsIMutI	CAGTG	2 cut(s)	134, 228
Cac8I	GCNNGC	2 cut(s)	231, 410
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	22, 208, 269, 438
CviAII	CATG	5 cut(s)	103, 178, 359, 416, 442
CviJI	RGCY	6 cut(s)	141, 166, 241, 315, 580, 600
CviKI_1	RGCY	6 cut(s)	141, 166, 241, 315, 580, 600
CviQI	GTAC	4 cut(s)	22, 208, 269, 438
DdeI	CTNAG	2 cut(s)	317, 560
DpnI	GATC	2 cut(s)	370, 506
DpnII	GATC	2 cut(s)	368, 504
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	5 cut(s)	106, 181, 362, 419, 445
FaiI	YATR	8 cut(s)	104, 179, 311, 360, 417, 443, 517, 519
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	5 cut(s)	102, 177, 358, 415, 441
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	227, 635
FokI	GGATG	2 cut(s)	227, 473
Fsp4HI	GCNGC	2 cut(s)	227, 635
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	227, 635
GsaI	CCCAGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	106, 181, 362, 419, 445
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	4 cut(s)	97, 494, 538, 549
HphI	GGTGA	2 cut(s)	68, 620
Hpy166II	GTNNAC	4 cut(s)	208, 424, 526, 586
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	6 cut(s)	136, 391, 416, 484, 542, 587
Hpy8I	GTNNAC	4 cut(s)	208, 424, 526, 586
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	2 cut(s)	469, 623
HpyCH4IV	ACGT	2 cut(s)	431, 449
HpyCH4V	TGCA	3 cut(s)	229, 344, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	317, 560
HpySE526I	ACGT	2 cut(s)	431, 449
Hsp92II	CATG	5 cut(s)	106, 181, 362, 419, 445
HspAI	GCGC	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	368, 504
LguI	GCTCTTC	1 cut(s)	26
Lsp1109I	GCAGC	2 cut(s)	213, 621
LweI	GCATC	2 cut(s)	421, 477
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	2 cut(s)	431, 449
MaeIII	GTNAC	2 cut(s)	445, 608
MalI	GATC	2 cut(s)	370, 506
MboI	GATC	2 cut(s)	368, 504
MboII	GAAGA	3 cut(s)	43, 164, 394
MflI	RGATCY	2 cut(s)	368, 504
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	488, 558
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	5 cut(s)	205, 240, 249, 257, 569
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	237, 471, 479
MspA1I	CMGCKG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	2 cut(s)	368, 504
NlaIII	CATG	5 cut(s)	106, 181, 362, 419, 445
NlaIV	GGNNCC	2 cut(s)	148, 270
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	106
PagI	TCATGA	1 cut(s)	415
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	97, 538
PkrI	GCNGC	2 cut(s)	228, 636
PleI	GAGTC	2 cut(s)	488, 557
PpsI	GAGTC	2 cut(s)	488, 557
Ppu21I	YACGTR	1 cut(s)	450
PscI	ACATGT	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	148, 270
PsuI	RGATCY	2 cut(s)	368, 504
RsaI	GTAC	4 cut(s)	23, 209, 270, 439
RsaNI	GTAC	4 cut(s)	22, 208, 269, 438
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	237, 471, 479
SatI	GCNGC	2 cut(s)	227, 635
Sau3AI	GATC	2 cut(s)	368, 504
SchI	GAGTC	2 cut(s)	488, 558
SetI	ASST	8 cut(s)	143, 168, 207, 243, 274, 307, 434, 452
SfaNI	GCATC	2 cut(s)	421, 477
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	2 cut(s)	110, 632
SspMI	CTAG	1 cut(s)	581
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	469, 623
TaiI	ACGT	2 cut(s)	434, 452
TaqI	TCGA	1 cut(s)	135
TasI	AATT	1 cut(s)	351
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	2 cut(s)	97, 538
Tru1I	TTAA	3 cut(s)	237, 471, 479
Tru9I	TTAA	3 cut(s)	237, 471, 479
TscAI	CASTG	2 cut(s)	134, 228
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	226, 634
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	3 cut(s)	44, 231, 432
TspRI	CASTG	2 cut(s)	134, 228
XapI	RAATTY	1 cut(s)	351
XceI	RCATGY	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.