FvH4_5g08190

SNF1-related protein kinase regulatory subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
4764485 .. 4768230
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08190.t3

Sequence Viewer

Length: 1299 bp
ATGGGTGTGCCGGCGGCGAATAGGGACGGCGAGAGTACTCCGAGGAGTCCAGAGGCGAAGGTGGGGATGCATGTAGAGGATCTGTGGGACATACAAGAGCCTCAGTTGTCTCCCACCGAAAAGCTCAATGCTTGCTTTGAGAGTGTTCCAGTTTCTGACTTCCCTACTGCTCCTTCTAATCAAGTGATTGAGATAAAGTCAGACACTAGTTTAGCTGAGGCAGTCAAAATCCTGGCTGAACATAAAATTCTGAGTGCTCCGGTGGTGGATGTCGATGCGCCTGAGGATGCTAGCTGGATTGACAGATATATTGGCATGGTCGAGTTTGCGGGGATTGTTGTGTGGATTCTACATCAGTCAGAACCGTCATCTCCAAGGACTCCGAGGACTCCAAGTACTCCGAGTAGTCCATCTAGTGCAACTGCTATAGCGGCAGCTGCTAATGGACTAAAAGGTCTTGATCTTGCAGGACTGTTAGAAAACGGCTCTGACTTTGCTGTGCCAACTTCAGGAAACTTTTTTGAGGCTTTGACTTCTTCCGAGTTTTACAAGAACACACAGGTTCGAGATATCTCAGGGTCGTTCCGATGGGCACCATTTCTGGCCTTGCAGAAGGACAACACCTTTCTGACCATGCTCTTGCTGCTCTCAAAGTACAAAATGAAGAGCGTTCCTGTAGTTGATTTAGGTGAAGGGAAGATTGATAACATCATCACGCAAGCTGCTGTCATTCATATGTTAGCAGAATGTGCTGGTCTTCAGTGGTTTGAAAGCTGGGGAACCAAGAAACTATCAGAACTTGGTCTCCCCCTAATGACTGCTGATTGCATTGTGAAGGTGTATGAGGATGAACCAGTGCTCCAAGCATTTAAGCTGATGAGGAAAAAGAAGGTTGGTGGGTTACCTGTCATTGAAAGTGGCGGTAGCAAGGCAGTCGGTAATATAAGCTTAAGAGATGTTCAGTTCTTGCTCACTGCACCAGAAATCTACCATGATTACAGATCCATCACGGCGAAAAACTTCCTGACAGCTGTTAGAAGCCATCTACAGAAGCAACATGAAGTCTACCCAATGCTGAGTACTATGGTTACTTGCAAAAGGGACGATACCATTAAGGATTTGATTCTGAAGCTGGACACTGAGAAGATCCACCGCGTGTATGTGGTGGGTGACAATGGAAATCTGGAAGGAGTCATTACGTTGAGGGACATCATCTCGAGGCTAGTCCATGAGCCCCGTGGCTACTTCGGTGACTTCTTTGATGGTGTTTTGCCCCTGCCCCAAAGCACCAGGGTTTAA

Protein Analysis

433

Amino Acids

47.45

Weight (kDa)

5.4

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 277 - 320 1.7e-08 CBS domain
CBS PF00571 358 - 409 2.7e-10 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48530
fragaria_vesca FvH4_5g08190 FvH4_5g08190 FvH4_5g08190
malus_domestica MD06G1142700.v1.1 MD14G1157900.v1.1
prunus_persica Prupe.5G152000_v2.0.a1 Prupe.5G152000_v2.0.a1
pyrus_communis pycom14g13140
rosa_chinensis RchiOBHm_Chr7g0190321
rosa_laevigata RLG00000004542
rosa_multiflora Rmu_sc0005487.1_g000002
rosa_roxburghii Rroxscaffold_3G00264730
rosa_rugosa Rorug06G0503900
rosa_samantha Rh7DG112500
rosa_wichuraiana Rw7G009500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 453
AccB1I GGYRCC 1 cut(s) 592
AccI GTMKAC 1 cut(s) 1065
AccII CGCG 1 cut(s) 1155
AciI CCGC 5 cut(s) 14, 329, 431, 921, 1153
AclWI GGATC 3 cut(s) 87, 996, 1141
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 3 cut(s) 492, 743, 1148
AdeI CACNNNGTG 1 cut(s) 1156
AfaI GTAC 4 cut(s) 37, 397, 656, 1081
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 949
AgsI TTSAA 2 cut(s) 770, 914
AhlI ACTAGT 1 cut(s) 206
AjnI CCWGG 2 cut(s) 231, 1289
AloI GAACNNNNNNTCC 4 cut(s) 789, 821, 843, 875
Alw21I GWGCWC 2 cut(s) 259, 861
Alw26I GTCTC 2 cut(s) 114, 809
AlwI GGATC 3 cut(s) 87, 996, 1141
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 1216
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 4 cut(s) 434, 437, 643, 722
ApoI RAATTY 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 701, 1181, 1262
AsuNHI GCTAGC 1 cut(s) 290
AvaI CYCGRG 1 cut(s) 1216
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 749
Bbv12I GWGCWC 2 cut(s) 259, 861
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 424, 446, 630, 709
BccI CCATC 5 cut(s) 418, 582, 1013, 1050, 1256
BceAI ACGGC 3 cut(s) 43, 499, 1026
BcgI CGANNNNNNTGC 2 cut(s) 916, 950
BciT130I CCWGG 2 cut(s) 233, 1291
BcoDI GTCTC 2 cut(s) 114, 809
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 4 cut(s) 207, 291, 414, 1223
BfmI CTRYAG 3 cut(s) 426, 675, 1046
BfrI CTTAAG 1 cut(s) 949
BisI GCNGC 6 cut(s) 15, 432, 435, 438, 644, 723
BlsI GCNGC 6 cut(s) 16, 433, 436, 439, 645, 724
BmcAI AGTACT 3 cut(s) 37, 397, 1081
Bme1390I CCNGG 2 cut(s) 233, 1291
BmeT110I CYCGRG 1 cut(s) 1216
BmiI GGNNCC 2 cut(s) 594, 781
BmrFI CCNGG 2 cut(s) 233, 1291
BmsI GCATC 3 cut(s) 57, 265, 277
BmtI GCTAGC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 809
BsaJI CCNNGG 5 cut(s) 41, 374, 383, 1237, 1290
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 789, 819, 843, 873
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 2 cut(s) 149, 854
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 2 cut(s) 233, 1291
BseDI CCNNGG 5 cut(s) 41, 374, 383, 1237, 1290
BseGI GGATG 4 cut(s) 72, 274, 292, 853
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 7 cut(s) 116, 207, 242, 273, 588, 1067, 1131
BseNI ACTGG 2 cut(s) 149, 854
BseRI GAGGAG 1 cut(s) 58
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 4 cut(s) 424, 446, 630, 709
BseYI CCCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 960
Bsh1236I CGCG 1 cut(s) 1155
BshFI GGCC 1 cut(s) 605
BshNI GGYRCC 1 cut(s) 592
BsiHKAI GWGCWC 2 cut(s) 259, 861
BsiHKCI CYCGRG 1 cut(s) 1216
BsiSI CCGG 2 cut(s) 11, 260
BslFI GGGAC 4 cut(s) 38, 101, 1115, 1220
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 2 cut(s) 114, 809
BsmFI GGGAC 4 cut(s) 38, 101, 1115, 1220
BsnI GGCC 1 cut(s) 605
Bso31I GGTCTC 1 cut(s) 809
BsoBI CYCGRG 1 cut(s) 1216
Bsp1286I GDGCHC 4 cut(s) 259, 595, 861, 1236
Bsp143I GATC 4 cut(s) 79, 460, 1001, 1146
BspACI CCGC 5 cut(s) 14, 329, 431, 921, 1153
BspANI GGCC 1 cut(s) 605
BspCNI CTCAG 7 cut(s) 115, 208, 243, 274, 587, 1068, 1132
BspFNI CGCG 1 cut(s) 1155
BspLI GGNNCC 2 cut(s) 594, 781
BspOI GCTAGC 1 cut(s) 294
BspPI GGATC 3 cut(s) 87, 996, 1141
BspQI GCTCTTC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 949
BspTNI GGTCTC 1 cut(s) 809
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 2 cut(s) 149, 854
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 5 cut(s) 41, 374, 383, 1237, 1290
BssMI GATC 4 cut(s) 79, 460, 1001, 1146
BssT1I CCWWGG 1 cut(s) 374
Bst2UI CCWGG 2 cut(s) 233, 1291
Bst4CI ACNGT 2 cut(s) 366, 474
Bst6I CTCTTC 1 cut(s) 659
BstAFI CTTAAG 1 cut(s) 949
BstAPI GCANNNNNTGC 1 cut(s) 749
BstC8I GCNNGC 4 cut(s) 12, 133, 292, 720
BstDEI CTNAG 7 cut(s) 102, 216, 251, 282, 574, 1076, 1140
BstDSI CCRYGG 1 cut(s) 1237
BstEII GGTNACC 1 cut(s) 900
BstF5I GGATG 4 cut(s) 72, 274, 292, 853
BstFNI CGCG 1 cut(s) 1155
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 4 cut(s) 82, 463, 1004, 1149
BstMAI GTCTC 2 cut(s) 114, 809
BstMBI GATC 4 cut(s) 79, 460, 1001, 1146
BstMWI GCNNNNNNNGC 4 cut(s) 431, 437, 643, 749
BstNI CCWGG 2 cut(s) 233, 1291
BstNSI RCATGY 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 231, 1289
BstSFI CTRYAG 3 cut(s) 426, 675, 1046
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 1 cut(s) 1155
BstV1I GCAGC 4 cut(s) 424, 446, 630, 709
BstV2I GAAGAC 1 cut(s) 749
BstX2I RGATCY 3 cut(s) 79, 1001, 1146
BstYI RGATCY 3 cut(s) 79, 1001, 1146
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 605
BtgI CCRYGG 1 cut(s) 1237
BtsCI GGATG 4 cut(s) 72, 274, 292, 853
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 4 cut(s) 767, 861, 972, 1137
Cac8I GCNNGC 4 cut(s) 12, 133, 292, 720
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 10
Csp6I GTAC 4 cut(s) 36, 396, 655, 1080
CviAII CATG 6 cut(s) 71, 316, 634, 992, 1058, 1229
CviQI GTAC 4 cut(s) 36, 396, 655, 1080
DdeI CTNAG 7 cut(s) 102, 216, 251, 282, 574, 1076, 1140
DpnI GATC 4 cut(s) 81, 462, 1003, 1148
DpnII GATC 4 cut(s) 79, 460, 1001, 1146
DraIII CACNNNGTG 1 cut(s) 1156
DrdI GACNNNNNNGTC 1 cut(s) 453
DseDI GACNNNNNNGTC 1 cut(s) 453
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 1236
Eco31I GGTCTC 1 cut(s) 809
Eco32I GATATC 1 cut(s) 571
Eco57I CTGAAG 3 cut(s) 492, 743, 1148
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 1216
Eco91I GGTNACC 1 cut(s) 900
EcoO65I GGTNACC 1 cut(s) 900
EcoRII CCWGG 2 cut(s) 231, 1289
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 1236
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 6 cut(s) 74, 319, 637, 995, 1061, 1232
FaqI GGGAC 4 cut(s) 38, 101, 1115, 1220
FatI CATG 6 cut(s) 70, 315, 633, 991, 1057, 1228
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 735
FblI GTMKAC 1 cut(s) 1065
Fnu4HI GCNGC 6 cut(s) 15, 432, 435, 438, 644, 723
FokI GGATG 4 cut(s) 79, 281, 299, 860
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 6 cut(s) 15, 432, 435, 438, 644, 723
FspBI CTAG 4 cut(s) 207, 291, 414, 1223
GlaI GCGC 1 cut(s) 279
GluI GCNGC 6 cut(s) 15, 432, 435, 438, 644, 723
GsaI CCCAGC 1 cut(s) 778
HaeIII GGCC 1 cut(s) 605
HapII CCGG 2 cut(s) 11, 260
HhaI GCGC 1 cut(s) 280
Hin1II CATG 6 cut(s) 74, 319, 637, 995, 1061, 1232
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 946
HinfI GANTC 6 cut(s) 46, 346, 379, 388, 1123, 1191
HpaII CCGG 2 cut(s) 11, 260
HphI GGTGA 3 cut(s) 701, 1181, 1262
Hpy166II GTNNAC 1 cut(s) 1066
Hpy188III TCNNGA 7 cut(s) 50, 458, 510, 566, 1024, 1184, 1216
Hpy8I GTNNAC 1 cut(s) 1066
HpyAV CCTTC 7 cut(s) 52, 183, 607, 686, 829, 883, 1181
HpyCH4III ACNGT 2 cut(s) 366, 474
HpyCH4IV ACGT 1 cut(s) 1199
HpyCH4V TGCA 7 cut(s) 70, 419, 467, 610, 828, 977, 1095
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 437, 643, 749
HpyF3I CTNAG 7 cut(s) 102, 216, 251, 282, 574, 1076, 1140
HpySE526I ACGT 1 cut(s) 1199
Hsp92II CATG 6 cut(s) 74, 319, 637, 995, 1061, 1232
HspAI GCGC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Kzo9I GATC 4 cut(s) 79, 460, 1001, 1146
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 3 cut(s) 175, 262, 864
Lsp1109I GCAGC 4 cut(s) 424, 446, 630, 709
LweI GCATC 3 cut(s) 57, 265, 277
MaeI CTAG 4 cut(s) 207, 291, 414, 1223
MaeII ACGT 1 cut(s) 1199
MaeIII GTNAC 4 cut(s) 900, 1087, 1169, 1250
MalI GATC 4 cut(s) 81, 462, 1003, 1148
MboI GATC 4 cut(s) 79, 460, 1001, 1146
MboII GAAGA 5 cut(s) 528, 676, 709, 749, 1156
MflI RGATCY 3 cut(s) 79, 1001, 1146
MhlI GDGCHC 4 cut(s) 259, 595, 861, 1236
MluCI AATT 1 cut(s) 246
MlyI GAGTC 4 cut(s) 55, 373, 382, 1200
Mph1103I ATGCAT 1 cut(s) 72
MroNI GCCGGC 1 cut(s) 10
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 4 cut(s) 870, 950, 1113, 1297
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 2 cut(s) 437, 1031
MspCI CTTAAG 1 cut(s) 949
MspI CCGG 2 cut(s) 11, 260
MspR9I CCNGG 2 cut(s) 233, 1291
MvaI CCWGG 2 cut(s) 233, 1291
MvnI CGCG 1 cut(s) 1155
MwoI GCNNNNNNNGC 4 cut(s) 431, 437, 643, 749
NaeI GCCGGC 1 cut(s) 12
NdeI CATATG 1 cut(s) 735
NdeII GATC 4 cut(s) 79, 460, 1001, 1146
NgoMIV GCCGGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 290
NlaIII CATG 6 cut(s) 74, 319, 637, 995, 1061, 1232
NlaIV GGNNCC 2 cut(s) 594, 781
NmuCI GTSAC 2 cut(s) 1169, 1250
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 1216
PciSI GCTCTTC 1 cut(s) 659
PdiI GCCGGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 2 cut(s) 346, 1123
PkrI GCNGC 6 cut(s) 16, 433, 436, 439, 645, 724
PleI GAGTC 4 cut(s) 54, 373, 382, 1199
PpsI GAGTC 4 cut(s) 54, 373, 382, 1199
Psp6I CCWGG 2 cut(s) 231, 1289
PspEI GGTNACC 1 cut(s) 900
PspFI CCCAGC 1 cut(s) 774
PspGI CCWGG 2 cut(s) 231, 1289
PspN4I GGNNCC 2 cut(s) 594, 781
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 3 cut(s) 79, 1001, 1146
PvuII CAGCTG 2 cut(s) 437, 1031
RsaI GTAC 4 cut(s) 37, 397, 656, 1081
RsaNI GTAC 4 cut(s) 36, 396, 655, 1080
RseI CAYNNNNRTG 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 4 cut(s) 870, 950, 1113, 1297
SatI GCNGC 6 cut(s) 15, 432, 435, 438, 644, 723
Sau3AI GATC 4 cut(s) 79, 460, 1001, 1146
ScaI AGTACT 3 cut(s) 37, 397, 1081
SchI GAGTC 4 cut(s) 55, 373, 382, 1200
ScrFI CCNGG 2 cut(s) 233, 1291
SduI GDGCHC 4 cut(s) 259, 595, 861, 1236
SfaNI GCATC 3 cut(s) 57, 265, 277
SfcI CTRYAG 3 cut(s) 426, 675, 1046
Sfr274I CTCGAG 1 cut(s) 1216
SlaI CTCGAG 1 cut(s) 1216
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 2 cut(s) 949, 1216
SmoI CTYRAG 2 cut(s) 949, 1216
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 1 cut(s) 246
SsiI CCGC 5 cut(s) 14, 329, 431, 921, 1153
SspMI CTAG 4 cut(s) 207, 291, 414, 1223
StyD4I CCNGG 2 cut(s) 231, 1289
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 366, 474
TaiI ACGT 1 cut(s) 1202
TaqI TCGA 4 cut(s) 273, 321, 565, 1217
TasI AATT 1 cut(s) 246
TatI WGTACW 4 cut(s) 35, 395, 654, 1079
TauI GCSGC 2 cut(s) 17, 434
TfiI GAWTC 2 cut(s) 346, 1123
Tru1I TTAA 4 cut(s) 870, 950, 1113, 1297
Tru9I TTAA 4 cut(s) 870, 950, 1113, 1297
TscAI CASTG 4 cut(s) 767, 861, 979, 1144
TseFI GTSAC 2 cut(s) 1169, 1250
TseI GCWGC 4 cut(s) 434, 437, 643, 722
Tsp45I GTSAC 2 cut(s) 1169, 1250
TspDTI ATGAA 4 cut(s) 677, 722, 864, 1074
TspRI CASTG 4 cut(s) 767, 861, 979, 1144
Vha464I CTTAAG 1 cut(s) 949
XapI RAATTY 1 cut(s) 246
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XhoI CTCGAG 1 cut(s) 1216
XmiI GTMKAC 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 4 cut(s) 207, 291, 414, 1223
ZrmI AGTACT 3 cut(s) 37, 397, 1081
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.