Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012116

Physical Location & Seq

Genomic Coordinates Forward (+)

61843965 .. 61845268

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0503900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCGAACAAAAATGGAGCAGCATTCCTAAACAAACAGTTGTGTATTGCAGGGCTCAAGAGATGTGGGAAGAGTTGCAGGCTTCGGTGGTTGAATTATCTAAGACCGAGTATAAAACGAGGCAATATTACGCAAGAGGAAGAGGACCTCATCATTAGGCTCCATAAACTCTTAGGAAACAGATGGTCTCTAATAGCAGGAAGAATTCCGGGGCGAACAGACAATGAAATCAAGAACTACTGGAACGGCCACTTGTGCAAGAAATCACAGCTGGAAAAGTCTAAGGTTGCAGCAAAGAATATGAGACCCTCCGACGAGGCCAAAGTTGAAGAGGATCATCGTCATGACTCCAAAGTTGAATCTGAATCCAGTGAAGGGTCATTATTCTCTCATTCATCTACTACGTCAACTACAACGGAAGAAGATTCGTCGGATATTTTGATGGATTTTTACACCAGGGAGATAACTCTGTCGGAGTTTCTGGATACCGACTTTACAAAGTTCAGCAGTATGATCAGTACTGATAAGGTACTGATGGTTCAAGGAGAAGGAGCGGATCAAATTCAGAAACAGCCTCAGGATAGTTCCAGTCAAGCTGAAGCCGAAGCTAATGATGAAGCACCTATGAATGTGATAATATCGCAGGAATTGATGGACAACTTGATCGGCTGGGAAGATCAAAGTGATTCAGATTTCGGATTTCAACTTTCGGCAGCTTTCACGGACTTTGTTGCAGACGAAGAAAGAATTTTGGATTTTATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0003674 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0019207 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030312 GO:0031323 GO:0031399 GO:0032268 GO:0042325 GO:0043549 GO:0044464 GO:0045859 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051338 GO:0060255 GO:0065007 GO:0065009 GO:0071944 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

4.86

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 85	6.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	44 - 88	2.8e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50380
fragaria_vesca	FvH4_5g08200 FvH4_5g08200
malus_domestica	MD06G1142600.v1.1 MD14G1157800.v1.1
prunus_persica	Prupe.5G151900_v2.0.a1
pyrus_communis	pycom06g13240 pycom14g13130
rosa_chinensis	RchiOBHm_Chr7g0190311
rosa_laevigata	RLG00000004543
rosa_multiflora	Rmu_co8286183.1_g000001 Rmu_sc0005487.1_g000003
rosa_roxburghii	Rroxscaffold_3G00264740
rosa_rugosa	Rorug06G0503900
rosa_samantha	Rh7AG109400 Rh7BG111800 Rh7CG114300 Rh7DG112400
rosa_wichuraiana	Rw7G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	554
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	342, 564
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	3 cut(s)	204, 561, 747
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	2 cut(s)	520, 531
AfiI	CCNNNNNNNGG	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	94, 329, 359, 542, 704
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	4 cut(s)	271, 596, 608, 716
AluI	AGCT	4 cut(s)	271, 596, 608, 716
Alw26I	GTCTC	2 cut(s)	192, 298
AlwI	GGATC	2 cut(s)	342, 564
AoxI	GGCC	2 cut(s)	247, 318
ApeKI	GCWGC	3 cut(s)	20, 290, 713
ApoI	RAATTY	3 cut(s)	204, 561, 747
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	32, 302, 725
BccI	CCATC	4 cut(s)	177, 436, 529, 646
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	457
BciVI	GTATCC	1 cut(s)	478
BclI	TGATCA	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	2 cut(s)	192, 298
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	3 cut(s)	21, 291, 714
BlsI	GCNGC	3 cut(s)	22, 292, 715
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	210, 457
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	210, 457
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	210
BsaI	GGTCTC	2 cut(s)	192, 298
BsaJI	CCNNGG	2 cut(s)	209, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	245, 369, 588
Bse21I	CCTNAGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	2 cut(s)	209, 456
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	3 cut(s)	245, 369, 588
BseXI	GCAGC	3 cut(s)	32, 302, 725
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	2 cut(s)	249, 320
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	2 cut(s)	192, 298
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	249, 320
Bso31I	GGTCTC	2 cut(s)	192, 298
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	334, 513, 556, 663, 676
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	2 cut(s)	249, 320
BspCNI	CTCAG	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	342, 564
BspTNI	GGTCTC	2 cut(s)	192, 298
BsrBI	CCGCTC	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	245, 369, 588
BssECI	CCNNGG	2 cut(s)	209, 456
BssMI	GATC	5 cut(s)	334, 513, 556, 663, 676
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	1 cut(s)	39
Bst6I	CTCTTC	3 cut(s)	65, 135, 324
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	4 cut(s)	101, 172, 282, 576
BstKTI	GATC	5 cut(s)	337, 516, 559, 666, 679
BstMAI	GTCTC	2 cut(s)	192, 298
BstMBI	GATC	5 cut(s)	334, 513, 556, 663, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	208, 455
BstV1I	GCAGC	3 cut(s)	32, 302, 725
Bsu36I	CCTNAGG	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	249, 320
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	519, 530
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	519, 530
DdeI	CTNAG	4 cut(s)	101, 172, 282, 576
DpnI	GATC	5 cut(s)	336, 515, 558, 665, 678
DpnII	GATC	5 cut(s)	334, 513, 556, 663, 676
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	65, 135, 324
EarI	CTCTTC	3 cut(s)	65, 135, 324
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	2 cut(s)	192, 298
Eco47I	GGWCC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	618
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	1 cut(s)	347
FaiI	YATR	7 cut(s)	113, 165, 302, 345, 512, 626, 761
FatI	CATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	3 cut(s)	21, 291, 714
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	21, 291, 714
GluI	GCNGC	3 cut(s)	21, 291, 714
GsaI	CCCAGC	1 cut(s)	673
HaeIII	GGCC	2 cut(s)	249, 320
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	5 cut(s)	347, 359, 365, 425, 686
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	7 cut(s)	313, 364, 433, 475, 567, 691, 698
Hpy188III	TCNNGA	5 cut(s)	58, 232, 344, 482, 578
Hpy8I	GTNNAC	1 cut(s)	408
Hpy99I	CGWCG	2 cut(s)	317, 433
HpyAV	CCTTC	2 cut(s)	368, 542
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	5 cut(s)	50, 78, 258, 290, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	4 cut(s)	101, 172, 282, 576
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	1 cut(s)	347
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	334, 513, 556, 663, 676
LmnI	GCTCC	3 cut(s)	17, 165, 551
Lsp1109I	GCAGC	3 cut(s)	32, 302, 725
MaeII	ACGT	1 cut(s)	404
MalI	GATC	5 cut(s)	336, 515, 558, 665, 678
MbiI	CCGCTC	1 cut(s)	554
MboI	GATC	5 cut(s)	334, 513, 556, 663, 676
MboII	GAAGA	8 cut(s)	82, 152, 213, 341, 431, 434, 686, 752
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	6 cut(s)	94, 204, 561, 647, 747, 763
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	3 cut(s)	336, 411, 453
MnlI	CCTC	8 cut(s)	113, 130, 136, 158, 310, 319, 325, 585
MseI	TTAA	1 cut(s)	766
MslI	CAYNNNNRTG	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	210, 457
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	457
MwoI	GCNNNNNNNGC	1 cut(s)	255
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	5 cut(s)	334, 513, 556, 663, 676
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	343
PctI	GAATGC	1 cut(s)	23
PfeI	GAWTC	4 cut(s)	359, 365, 425, 686
PkrI	GCNGC	3 cut(s)	22, 292, 715
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	2 cut(s)	520, 531
RsaNI	GTAC	2 cut(s)	519, 530
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	766
SatI	GCNGC	3 cut(s)	21, 291, 714
Sau3AI	GATC	5 cut(s)	334, 513, 556, 663, 676
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	210, 457
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	9 cut(s)	150, 273, 288, 407, 531, 598, 610, 625, 718
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	6 cut(s)	94, 204, 561, 647, 747, 763
SsiI	CCGC	1 cut(s)	554
SspI	AATATT	1 cut(s)	127
StyD4I	CCNGG	2 cut(s)	208, 455
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	407
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	6 cut(s)	94, 204, 561, 647, 747, 763
TatI	WGTACW	1 cut(s)	518
TfiI	GAWTC	4 cut(s)	359, 365, 425, 686
Tru1I	TTAA	1 cut(s)	766
Tru9I	TTAA	1 cut(s)	766
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	3 cut(s)	20, 290, 713
TspDTI	ATGAA	4 cut(s)	240, 384, 630, 641
TspGWI	ACGGA	2 cut(s)	431, 737
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	3 cut(s)	204, 561, 747
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.